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UniProtKB - F1QJP0 (F1QJP0_DANRE)
Protein
Submitted name:
Excision repair cross-complementation group 6-like 2
Gene
ercc6l2
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
GO - Molecular functioni
- ATP binding Source: UniProtKB-KW
Keywordsi
Ligand | ATP-bindingARBA annotation, Nucleotide-binding |
Names & Taxonomyi
Protein namesi | Submitted name: Excision repair cross-complementation group 6-like 2Imported |
Gene namesi | Name:ercc6l2Imported |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-110411-274, ercc6l2 |
Expressioni
Gene expression databases
Bgeei | ENSDARG00000012403, Expressed in mature ovarian follicle and 24 other tissues |
Structurei
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 72 – 254 | Helicase ATP-bindingInterPro annotationAdd BLAST | 183 | |
Domaini | 449 – 603 | Helicase C-terminalInterPro annotationAdd BLAST | 155 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 35 | DisorderedSequence analysisAdd BLAST | 35 | |
Regioni | 686 – 710 | DisorderedSequence analysisAdd BLAST | 25 | |
Regioni | 734 – 801 | DisorderedSequence analysisAdd BLAST | 68 | |
Regioni | 836 – 868 | DisorderedSequence analysisAdd BLAST | 33 | |
Regioni | 1033 – 1091 | DisorderedSequence analysisAdd BLAST | 59 | |
Regioni | 1243 – 1269 | DisorderedSequence analysisAdd BLAST | 27 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 1 – 29 | Basic and acidic residuesSequence analysisAdd BLAST | 29 | |
Compositional biasi | 751 – 801 | Basic and acidic residuesSequence analysisAdd BLAST | 51 | |
Compositional biasi | 836 – 855 | Basic and acidic residuesSequence analysisAdd BLAST | 20 | |
Compositional biasi | 1070 – 1091 | Basic and acidic residuesSequence analysisAdd BLAST | 22 |
Phylogenomic databases
eggNOGi | KOG0387, Eukaryota |
GeneTreei | ENSGT00940000161328 |
HOGENOMi | CLU_000315_17_10_1 |
OMAi | VAYTHSN |
OrthoDBi | 372069at2759 |
PhylomeDBi | F1QJP0 |
TreeFami | TF351516 |
Family and domain databases
Gene3Di | 3.40.50.10810, 1 hit 3.40.50.300, 1 hit |
InterProi | View protein in InterPro IPR014001, Helicase_ATP-bd IPR001650, Helicase_C IPR029256, Heliccase-ass-bd IPR027417, P-loop_NTPase IPR038718, SNF2-like_sf IPR000330, SNF2_N |
Pfami | View protein in Pfam PF00271, Helicase_C, 1 hit PF00176, SNF2-rel_dom, 1 hit PF14773, VIGSSK, 1 hit |
SMARTi | View protein in SMART SM00487, DEXDc, 1 hit SM00490, HELICc, 1 hit |
SUPFAMi | SSF52540, SSF52540, 2 hits |
PROSITEi | View protein in PROSITE PS51192, HELICASE_ATP_BIND_1, 1 hit PS51194, HELICASE_CTER, 1 hit |
i Sequence
Sequence statusi: Fragment.
F1QJP0-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MEMNEEKDSS TKCQDARTPL PHFEDEKPLF HSNQTPPGPS EAFLLAGSDV
60 70 80 90 100
KVPYTINRYL RDYQREGIKF IYQNYAKSRG CILGDDMGLG KTVQVIGFLA
110 120 130 140 150
AVLQKTGTWK DVENNRPQFL LSQKPSERVQ KVFVIVAPLS VLYNWKDELD
160 170 180 190 200
TWGHFRVVVV HGVRKDEELA RVQRGRCEIA LTTYETLRLC LDQFNSINWA
210 220 230 240 250
AVIVDEAHKI KNHKSKITQA VKQMRCKVRI GLTGTILQNN LEELWCVMNW
260 270 280 290 300
AVPRCLGSLG AFKNRFSDPI EKGQKHTVTK RALAEGRKAV QELAKKLSRW
310 320 330 340 350
FLRRTKSLIS DQLPKKDDRV VYCSLTDFQR TVYRAVLDSD DVTLMLQSSG
360 370 380 390 400
KCPCSSGRPR KKCCYKLNAD GVPVRHLYFS YLAILRKVAN HVALLQSKDG
410 420 430 440 450
TSKKQEKYVT TICEQVFRKF PDFTERCKQA AFEAMSDPMY SGKMKVMQKL
460 470 480 490 500
LNHFIAKKDK VLLFSLSTKL LDVLESYCMA EGLEYHRLDG NTKSKDRVKI
510 520 530 540 550
VKEFNSSRDV NLCLVSTLAG GLGLNFIGAN VVVLFDPTWN PANDLQAIDR
560 570 580 590 600
VYRIGQCRDV TVFRLISLGT VEEIIYLRQV YKQQLQSSVI GQENARRYFE
610 620 630 640 650
AVQGTDGYAG ELFGIRNLFR LQTDGTCLTH RILEREGQLE VGIMTARTQA
660 670 680 690 700
VDERMQEPDP WSADAATERA GGSAGVCIKP AEVLDFSSGS EDEDPCCSKQ
710 720 730 740 750
RPSETHSGEQ MVASNTCIGN TGLCNLLQKQ MTEIRQRDTD TEEDSSSESH
760 770 780 790 800
DEDDNCEKLT AIKTSKVKDL SSESEEELEG VSDGELQRRS HKDSTKDGKN
810 820 830 840 850
HCRKRVKFAE RSEDEIEHFS WSDDEGFLKA VRCVKEKESD HRQSSRRENT
860 870 880 890 900
TSGFKKGQSR DEGYTGTLDS LLGGLQQVGY THSNQKVVGS SRAEDRLSRA
910 920 930 940 950
AVREVFELHK HSQLPANQIL NVSETESSDP ILTDHVNGGQ TPMTRSRPHI
960 970 980 990 1000
EHPVTHTIKT SHRQNNLTVI VGETPSSMCR QQLEEMAQFF GFNSVRDFAE
1010 1020 1030 1040 1050
EILKSDSDQR LGRLRSFYSQ KSPELMNIIK KTFPKPNIQP NPPNAPPLSA
1060 1070 1080 1090 1100
ARHKPTSKRA HPNSSVEVPT PEAEDRRKTS KKKKTSETEA SKIDLHCSTD
1110 1120 1130 1140 1150
LTKTKMKKSS TDISPSSSSG NIPQINCAPV EECIPNITSS SQPCTSRSAC
1160 1170 1180 1190 1200
VSTDDCVAST SSQTSSSSKI TDLLGDTSIL NDLFKTKKKV VDQPRDVKTS
1210 1220 1230 1240 1250
ACTERAPKRG KDFWDILNEG NEESINKLTN LTEVEKICNS VSVSAKPKSN
1260
GETESSQLWK KNEKFLWKR
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Non-terminal residuei | 1269 | Imported | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR376747 Genomic DNA No translation available. |
RefSeqi | NP_001314698.1, NM_001327769.1 XP_009302339.1, XM_009304064.2 XP_009302340.1, XM_009304065.2 |
Genome annotation databases
Ensembli | ENSDART00000125173; ENSDARP00000109375; ENSDARG00000012403 |
GeneIDi | 553504 |
KEGGi | dre:553504 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CR376747 Genomic DNA No translation available. |
RefSeqi | NP_001314698.1, NM_001327769.1 XP_009302339.1, XM_009304064.2 XP_009302340.1, XM_009304065.2 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 7955.ENSDARP00000109375 |
Proteomic databases
PaxDbi | F1QJP0 |
Genome annotation databases
Ensembli | ENSDART00000125173; ENSDARP00000109375; ENSDARG00000012403 |
GeneIDi | 553504 |
KEGGi | dre:553504 |
Organism-specific databases
CTDi | 375748 |
ZFINi | ZDB-GENE-110411-274, ercc6l2 |
Phylogenomic databases
eggNOGi | KOG0387, Eukaryota |
GeneTreei | ENSGT00940000161328 |
HOGENOMi | CLU_000315_17_10_1 |
OMAi | VAYTHSN |
OrthoDBi | 372069at2759 |
PhylomeDBi | F1QJP0 |
TreeFami | TF351516 |
Gene expression databases
Bgeei | ENSDARG00000012403, Expressed in mature ovarian follicle and 24 other tissues |
Family and domain databases
Gene3Di | 3.40.50.10810, 1 hit 3.40.50.300, 1 hit |
InterProi | View protein in InterPro IPR014001, Helicase_ATP-bd IPR001650, Helicase_C IPR029256, Heliccase-ass-bd IPR027417, P-loop_NTPase IPR038718, SNF2-like_sf IPR000330, SNF2_N |
Pfami | View protein in Pfam PF00271, Helicase_C, 1 hit PF00176, SNF2-rel_dom, 1 hit PF14773, VIGSSK, 1 hit |
SMARTi | View protein in SMART SM00487, DEXDc, 1 hit SM00490, HELICc, 1 hit |
SUPFAMi | SSF52540, SSF52540, 2 hits |
PROSITEi | View protein in PROSITE PS51192, HELICASE_ATP_BIND_1, 1 hit PS51194, HELICASE_CTER, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | F1QJP0_DANRE | |
Accessioni | F1QJP0Primary (citable) accession number: F1QJP0 Secondary accession number(s): F1R460 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | May 3, 2011 |
Last sequence update: | September 21, 2011 | |
Last modified: | January 19, 2022 | |
This is version 77 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |