UniProtKB - F1Q558 (F1Q558_DANRE)
Protein
Submitted name:
Smoothelin b
Gene
smtnb
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Names & Taxonomyi
Protein namesi | Submitted name: Smoothelin bImported |
Gene namesi | Name:smtnbImported |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-070912-2, smtnb |
Subcellular locationi
Cytoskeleton
- filamentous actin Source: GO_Central
- microtubule organizing center Source: GO_Central
Expressioni
Gene expression databases
Bgeei | ENSDARG00000059442, Expressed in retina and 32 other tissues |
ExpressionAtlasi | F1Q558, baseline and differential |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 290 – 396 | Calponin-homology (CH)InterPro annotationAdd BLAST | 107 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 151 – 240 | DisorderedSequence analysisAdd BLAST | 90 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 151 – 167 | PolarSequence analysisAdd BLAST | 17 | |
Compositional biasi | 174 – 211 | PolarSequence analysisAdd BLAST | 38 |
Phylogenomic databases
eggNOGi | KOG4678, Eukaryota |
GeneTreei | ENSGT00940000154495 |
HOGENOMi | CLU_040651_0_1_1 |
InParanoidi | F1Q558 |
OMAi | GCHATET |
TreeFami | TF316716 |
Family and domain databases
CDDi | cd00014, CH, 1 hit |
Gene3Di | 1.10.418.10, 1 hit |
InterProi | View protein in InterPro IPR001715, CH-domain IPR036872, CH_dom_sf IPR022189, SMTN |
Pfami | View protein in Pfam PF00307, CH, 1 hit PF12510, Smoothelin, 1 hit |
SMARTi | View protein in SMART SM00033, CH, 1 hit |
SUPFAMi | SSF47576, SSF47576, 1 hit |
PROSITEi | View protein in PROSITE PS50021, CH, 1 hit |
(1+)i Sequence
Sequence statusi: Fragment.
This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All
F1Q558-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
LKRDVNLCGV FLQSTFISLH TQMETEPVSL VGESVIETSH DVPVLPNGSS
60 70 80 90 100
MTSIKTEAQS EKLTSEKLRD IEDEEILDKM LDECKDFEER KMIRTAMREL
110 120 130 140 150
RKKKREAKLG CTQEEMDQRE KERDQRLLEL RQQREDRCKK ADGSNVLIKK
160 170 180 190 200
TERSADSSTV SHITNRISHT DDAGRTSRST IMESSYIQKT DKGTTQTKSY
210 220 230 240 250
SYSSTTSTRK VGSVFDREDN TSRSSSRSSA LDRRQAERSE LMRAQTLPKT
260 270 280 290 300
SAAQARKAMI EKLENTSGNL AIAQVNRVQR STSFGVPNAN SIKQMLLDWC
310 320 330 340 350
RSKTRSYENV DIQNFSSSWS DGMAFCALVH NFFPEAFDYS SLSPTNRRQN
360 370 380 390 400
FETAFSTAER LADCPQLLDV EDMVRMREPD WKCVYTAYAN CMPLLEVEDM
410 420 430
MIMGKKPDSK CVFTYVQSLV NHLRRCEMMR ARAQQTSDF
Computationally mapped potential isoform sequencesi
There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketF1QHB6 | F1QHB6_DANRE | Smoothelin b | smtnb | 326 | Annotation score: | ||
A0A2R8Q1F4 | A0A2R8Q1F4_DANRE | Smoothelin b | smtnb | 356 | Annotation score: | ||
A0A2R8RHM9 | A0A2R8RHM9_DANRE | Smoothelin b | smtnb | 335 | Annotation score: | ||
X1WC55 | X1WC55_DANRE | Smoothelin b | smtnb | 101 | Annotation score: |
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Non-terminal residuei | 1 | Imported | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CU463315 Genomic DNA No translation available. |
Genome annotation databases
Ensembli | ENSDART00000144570; ENSDARP00000116548; ENSDARG00000059442 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | CU463315 Genomic DNA No translation available. |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 7955.ENSDARP00000116548 |
Proteomic databases
PaxDbi | F1Q558 |
Genome annotation databases
Ensembli | ENSDART00000144570; ENSDARP00000116548; ENSDARG00000059442 |
Organism-specific databases
ZFINi | ZDB-GENE-070912-2, smtnb |
Phylogenomic databases
eggNOGi | KOG4678, Eukaryota |
GeneTreei | ENSGT00940000154495 |
HOGENOMi | CLU_040651_0_1_1 |
InParanoidi | F1Q558 |
OMAi | GCHATET |
TreeFami | TF316716 |
Gene expression databases
Bgeei | ENSDARG00000059442, Expressed in retina and 32 other tissues |
ExpressionAtlasi | F1Q558, baseline and differential |
Family and domain databases
CDDi | cd00014, CH, 1 hit |
Gene3Di | 1.10.418.10, 1 hit |
InterProi | View protein in InterPro IPR001715, CH-domain IPR036872, CH_dom_sf IPR022189, SMTN |
Pfami | View protein in Pfam PF00307, CH, 1 hit PF12510, Smoothelin, 1 hit |
SMARTi | View protein in SMART SM00033, CH, 1 hit |
SUPFAMi | SSF47576, SSF47576, 1 hit |
PROSITEi | View protein in PROSITE PS50021, CH, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | F1Q558_DANRE | |
Accessioni | F1Q558Primary (citable) accession number: F1Q558 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | May 3, 2011 |
Last sequence update: | May 14, 2014 | |
Last modified: | October 7, 2020 | |
This is version 52 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |