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Protein
Submitted name:

Collagen type IX alpha 1 chain

Gene

COL9A1

Organism
Canis lupus familiaris (Dog) (Canis familiaris)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Enzyme and pathway databases

ReactomeiR-CFA-1650814 Collagen biosynthesis and modifying enzymes
R-CFA-186797 Signaling by PDGF
R-CFA-2022090 Assembly of collagen fibrils and other multimeric structures
R-CFA-216083 Integrin cell surface interactions
R-CFA-3000178 ECM proteoglycans
R-CFA-419037 NCAM1 interactions
R-CFA-8948216 Collagen chain trimerization

Names & Taxonomyi

Protein namesi
Submitted name:
Collagen type IX alpha 1 chainImported
Gene namesi
Name:COL9A1Imported
OrganismiCanis lupus familiaris (Dog) (Canis familiaris)Imported
Taxonomic identifieri9615 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaCanidaeCanis
Proteomesi
  • UP000002254 Componenti: Chromosome 12

Organism-specific databases

VGNCiVGNC:49782 COL9A1

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_500326769524 – 835Sequence analysisAdd BLAST812

Proteomic databases

PaxDbiF1PPQ7

Expressioni

Gene expression databases

BgeeiENSCAFG00000002589 Expressed in 1 organ(s), highest expression level in prefrontal cortex

Interactioni

Protein-protein interaction databases

STRINGi9615.ENSCAFP00000003773

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini50 – 244LAM_G_DOMAINInterPro annotationAdd BLAST195

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XS0A LUCA
GeneTreeiENSGT00900000140850
InParanoidiF1PPQ7
OMAiLIHCDPL
OrthoDBiEOG091G0ESN
TreeFamiTF332900

Family and domain databases

InterProiView protein in InterPro
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR001791 Laminin_G
PfamiView protein in Pfam
PF01391 Collagen, 5 hits
SMARTiView protein in SMART
SM00210 TSPN, 1 hit
SUPFAMiSSF49899 SSF49899, 1 hit

Sequencei

Sequence statusi: Complete.

F1PPQ7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKNFWKIPVF FFVCSFLGSW TSAAVKRRPR FPVNSNSNGG NELCPKVRIG
60 70 80 90 100
QDDLPGFDLI SQFQVDKAAS RRAIQRVVGS TALQVAYKLG NNADFRIPTR
110 120 130 140 150
DLYPSGLPEE YSFLTTFRMT GSTLEKNWSI WQIQDSSGKE QVGVKINGQT
160 170 180 190 200
KSVAFSYKGV DGSLQTATFS NLPSLFDSQW HKIMIGVERS SATLFVDCNR
210 220 230 240 250
IQSLPIKPRG QIDVDGFAVL GKLADNPQVS VPFELQWMLI HCDPLRPRRE
260 270 280 290 300
TCHELPVRVT PSETADQRGP PGVQGPPGPP GPPGVPGIDG IDGDRGPKGP
310 320 330 340 350
PGPPPRGPHG GGGGAGRGGP GCPGENGLTG PDGSPGSVGP RGQKGEPGVP
360 370 380 390 400
GSRGFPGRGI PGPPGPPGAA GLPGELGRVG PIGDPGRRGP PGPPGPPGPS
410 420 430 440 450
GTIGFHDGDP LCPNSCPPGR SGYPGLPGMR GHKGAKGEIG EPGRQGHKGE
460 470 480 490 500
EGDQGEQGEV GAQGPPGAQG LRGITGIVGA KGEKGARGID GEPGPQGIPG
510 520 530 540 550
APGDQGQRGP PGEIGPKGDR GPQGSRGIPG LPGTKGDTGL PGVDGREGIP
560 570 580 590 600
GMPGTKGEPG KPGPPGDAGL QGLPGVPGIP GAKGVAGEKG NTGAPGKPGQ
610 620 630 640 650
LGNSGKPGQQ GPPGEVGPRG PRGLPGSRGE VGPVGPPGLP GKLGSLGSPG
660 670 680 690 700
LPGLPGPPGL PGMKGDRGVV GEPGPKGERG SSGEEGEAGE RGELGEIGLP
710 720 730 740 750
GPKGSVGNPG EPGLRGPEGS RGLPGEEGPR GPPGPRGVQG EQGATGLPGI
760 770 780 790 800
QGPPGRAPTD QHIKQVCMRV MQEHLAEMAA SLKRPDSGAS GLPGRPGPPG
810 820 830
PPGPPGENGF PGQMGLRGLP GIKGPPGALG LRGPK
Length:835
Mass (Da):83,650
Last modified:October 31, 2012 - v2
Checksum:i4150747C0DE33D25
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAEX03008445 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSCAFT00000004081; ENSCAFP00000003773; ENSCAFG00000002589

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAEX03008445 Genomic DNA No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9615.ENSCAFP00000003773

Proteomic databases

PaxDbiF1PPQ7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSCAFT00000004081; ENSCAFP00000003773; ENSCAFG00000002589

Organism-specific databases

VGNCiVGNC:49782 COL9A1

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XS0A LUCA
GeneTreeiENSGT00900000140850
InParanoidiF1PPQ7
OMAiLIHCDPL
OrthoDBiEOG091G0ESN
TreeFamiTF332900

Enzyme and pathway databases

ReactomeiR-CFA-1650814 Collagen biosynthesis and modifying enzymes
R-CFA-186797 Signaling by PDGF
R-CFA-2022090 Assembly of collagen fibrils and other multimeric structures
R-CFA-216083 Integrin cell surface interactions
R-CFA-3000178 ECM proteoglycans
R-CFA-419037 NCAM1 interactions
R-CFA-8948216 Collagen chain trimerization

Gene expression databases

BgeeiENSCAFG00000002589 Expressed in 1 organ(s), highest expression level in prefrontal cortex

Family and domain databases

InterProiView protein in InterPro
IPR008160 Collagen
IPR013320 ConA-like_dom_sf
IPR001791 Laminin_G
PfamiView protein in Pfam
PF01391 Collagen, 5 hits
SMARTiView protein in SMART
SM00210 TSPN, 1 hit
SUPFAMiSSF49899 SSF49899, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiF1PPQ7_CANLF
AccessioniPrimary (citable) accession number: F1PPQ7
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: October 31, 2012
Last modified: September 12, 2018
This is version 52 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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