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Entry version 65 (13 Feb 2019)
Sequence version 1 (03 May 2011)
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Protein
Submitted name:

Collagen alpha-3(VI) chain

Gene

COL6A3

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-GGA-1442490 Collagen degradation
R-GGA-1650814 Collagen biosynthesis and modifying enzymes
R-GGA-186797 Signaling by PDGF
R-GGA-2022090 Assembly of collagen fibrils and other multimeric structures
R-GGA-216083 Integrin cell surface interactions
R-GGA-3000178 ECM proteoglycans
R-GGA-419037 NCAM1 interactions
R-GGA-8948216 Collagen chain trimerization

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Collagen alpha-3(VI) chainImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:COL6A3Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiGallus gallus (Chicken)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9031 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000539 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 7

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 25Sequence analysisAdd BLAST25
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500326702526 – 3137Sequence analysisAdd BLAST3112

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
F1P2F0

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSGALG00000003923 Expressed in 9 organ(s), highest expression level in colon

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
F1P2F0 baseline and differential

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini38 – 212VWFAInterPro annotationAdd BLAST175
Domaini241 – 418VWFAInterPro annotationAdd BLAST178
Domaini444 – 623VWFAInterPro annotationAdd BLAST180
Domaini644 – 817VWFAInterPro annotationAdd BLAST174
Domaini842 – 1014VWFAInterPro annotationAdd BLAST173
Domaini1035 – 1207VWFAInterPro annotationAdd BLAST173
Domaini1239 – 1410VWFAInterPro annotationAdd BLAST172
Domaini1441 – 1621VWFAInterPro annotationAdd BLAST181
Domaini1641 – 1814VWFAInterPro annotationAdd BLAST174
Domaini1840 – 2029VWFAInterPro annotationAdd BLAST190
Domaini2407 – 2587VWFAInterPro annotationAdd BLAST181
Domaini2625 – 2821VWFAInterPro annotationAdd BLAST197
Domaini2957 – 3051Fibronectin type-IIIInterPro annotationAdd BLAST95
Domaini3072 – 3122BPTI/Kunitz inhibitorInterPro annotationAdd BLAST51

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG3544 Eukaryota
ENOG41103QR LUCA

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000156462

KEGG Orthology (KO)

More...
KOi
K06238

Identification of Orthologs from Complete Genome Data

More...
OMAi
SYVHANH

Database of Orthologous Groups

More...
OrthoDBi
1049829at2759

TreeFam database of animal gene trees

More...
TreeFami
TF337483

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00063 FN3, 1 hit
cd00109 KU, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.40.10, 1 hit
3.40.50.410, 12 hits
4.10.410.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008160 Collagen
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR013783 Ig-like_fold
IPR002223 Kunitz_BPTI
IPR036880 Kunitz_BPTI_sf
IPR020901 Prtase_inh_Kunz-CS
IPR002035 VWF_A
IPR036465 vWFA_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01391 Collagen, 3 hits
PF00014 Kunitz_BPTI, 1 hit
PF00092 VWA, 11 hits

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00759 BASICPTASE

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00131 KU, 1 hit
SM00327 VWA, 12 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49265 SSF49265, 1 hit
SSF53300 SSF53300, 12 hits
SSF57362 SSF57362, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00280 BPTI_KUNITZ_1, 1 hit
PS50279 BPTI_KUNITZ_2, 1 hit
PS50853 FN3, 1 hit
PS50234 VWFA, 12 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

F1P2F0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRKHRHLPLA AILGLLLSGF CSVGAQQQAA VRNVAVADII FLVDSSWSIG
60 70 80 90 100
KEHFQLVREF LYDVVKALDV GGNDFRFALV QFSGNPHTEF QLNTYPSNQD
110 120 130 140 150
VLSHIANMPY MGGGSKTGKG LEYLIENHLT KAAGSRASEG VPQVIIVLTD
160 170 180 190 200
GQSQDDVALP SSVLKSAHVN MIAVGVQDAV EGELKEIASR PFDTHLFNLE
210 220 230 240 250
NFTALHGIVG DLVASVRTSM TPEQAGAKGL VKDITAQESA DLIFLIDGSD
260 270 280 290 300
NIGSVNFQAI RDFLVNLIES LRVGAQQIHI GVVQYSDQPR TEFALNSYST
310 320 330 340 350
KADVLDAVKA LSFRGGKEAN TGAALEYVVE NLFTQAGGSR IEEAVPQILV
360 370 380 390 400
LISGGESSDD IREGLLAVKQ ASIFSFSIGV LNADSAELQQ IATDGSFAFT
410 420 430 440 450
ALDIRNLAAL RELLLPNIVG VAQRLILLEA PTIVTEVIEV NKKDIVFLID
460 470 480 490 500
GSTALGTGPF NSIRDFVAKI VQRLEVGPDL IQVAVAQYAD TVRPEFYFNT
510 520 530 540 550
HQNRKDVMAN VKKMKLMGGT ALNTGSALDF VRNNFFTSAA GCRMEEGVLP
560 570 580 590 600
MLVLITGGKS MDAVEQAAAE MKRNRIVILA VGSRNADVAE LQEIAHERDF
610 620 630 640 650
VFQPNDFRLQ FMQAILPEVL SPIRTLSGGM VIHETPSVQV TKRDIIFLLD
660 670 680 690 700
GSLNVGNANF PFVRDFVVTL VNYLDVGTDK IRVGLVQFSD TPKTEFSLYS
710 720 730 740 750
YQTKSDIIQR LGQLRPKGGS VLNTGSALNF VLSNHFTEAG GSRINEQVPQ
760 770 780 790 800
VLVLVTAGRS ADPFLQVSND LARAGVLTFA VGVRNADKAE LEQIAFNPKM
810 820 830 840 850
VYFMDDFSDL TTLPQELKKP ITTYVSGGVE EVPLAPTESK KDILFLIDGS
860 870 880 890 900
ANLLGSFPAV RDFIHKVISD LNVGPDATRV AVAQFSDNIQ IEFDFAELPS
910 920 930 940 950
KQDMLLKVKR MRLKTGKQLN IGVALDEVMR RLFVKEAGSR IEEGIPQFLV
960 970 980 990 1000
LLAAGRSTDE VERPSGALKE AGVVTFAIKA KNADLSELER IAYAPQFILN
1010 1020 1030 1040 1050
VESLPRISEL QANIVNLLKT IQFQPTVVER GEKKDVVFLI DGSDGVRRGF
1060 1070 1080 1090 1100
PLLKTFVERV VESLDIGRDK VRVAIVQYSN AIQPEFLLDA YEDKADLVSA
1110 1120 1130 1140 1150
IQALTIMGGS PLNTGAALDY LIKNVFTVSS GSRIAEGVPQ FLILLTADRS
1160 1170 1180 1190 1200
QDDVRRPSVV LKTSGTVPFG IGIGNADLTE LQTISFLPDF AISVPDFSQL
1210 1220 1230 1240 1250
DSVQQAVSNR VIRLTKKEIE SLAPDLVFTS PSPVGVKRDV VFLVDGSRYA
1260 1270 1280 1290 1300
AQEFYLIRDL IERIVNNLDV GFDTTRISVV QFSEHPHVEF LLNAHSTKDE
1310 1320 1330 1340 1350
VQGAVRRLRP RGGQQVNVGE ALEFVAKTIF TRPSGSRIEE GVPQFLVILS
1360 1370 1380 1390 1400
SRKSDDDLEF PSVQVKQVGV APMVIAKNMD PEEMVQISLS PDYVFQVSSF
1410 1420 1430 1440 1450
QELPSLEQKL LAPIETLTAD QIRQLLGDVT TIPDVSGEEK DVVFLIDSSD
1460 1470 1480 1490 1500
SVRSDGLAHI RDFISRIVQQ LDVGPNKVRI GVVQFSNNVF PEFYLRTHKS
1510 1520 1530 1540 1550
KNAVLQAIRR LRLRGGYPVN AGKALDYVVK NYFIKSAGSR IEDGVPQHLV
1560 1570 1580 1590 1600
VILGDQSQDD VNRPANVISS TSIQPLGVGA RNVDRNQLQV ITNDPGRVLV
1610 1620 1630 1640 1650
VQDFTGLPTL ERKVQNILEE LTVPTTEGPV YPGPEGKKQA DIVFLLDGSI
1660 1670 1680 1690 1700
NLGRDNFQEV LQFVYSIVDA IYEDGDSIQV GLAQYNSDVT DEFFLKDYSS
1710 1720 1730 1740 1750
KPEILDAINK VIYKGGRVAN TGAAIKHLQA KHFVKEAGSR IDQRVPQIAF
1760 1770 1780 1790 1800
IITGGKSSDD GQGASMEVAQ KGVKVFAVGV RNIDLEEVSK LASESATSFR
1810 1820 1830 1840 1850
VSTAQELSEL NEQVLVTLAA AMKEKLCPGT TDVTRDCDLD VILGFDVSDV
1860 1870 1880 1890 1900
GAGQNIFNSQ RGLESRVEAV LNRITQMQKI SCTGSRAPSV RVAIMAQSRG
1910 1920 1930 1940 1950
GPVEGLDFSE YQPELFERFQ GMRTRGPYFL TAETLKSYQN KFRSAPSGST
1960 1970 1980 1990 2000
KVVIHFTDGT DDYLDQMKTA SADLRRQGVH ALLFVGLDRV KNFEEVMQLE
2010 2020 2030 2040 2050
FGRGFTYNRP LRVNLLDLDF ELAEQLDNIA ERTCCGVPCK CSGQRGDRGL
2060 2070 2080 2090 2100
PGPIGPKGAT GEIGYGGYPG DEGGPGERGP PGVNGTQGFQ GCPGHRGTKG
2110 2120 2130 2140 2150
SRGFPGEKGE LGEMGLDGID GEEGDKGLPG SSGEKGFSGR RGSKGAKGER
2160 2170 2180 2190 2200
GERGDRGLRG DPGESGADNT QRGTRGQKGE IGQMGEPGPA GQRGQDGGVG
2210 2220 2230 2240 2250
RKGMAGRRGP IGVKGTKGAL GQPGPAGEQG MRGPQGPPGQ IGTPGIRGEQ
2260 2270 2280 2290 2300
GIPGPRAGGG QPGAPGERGR IGPLGRKGEP GNPGPRGPNG QQGPRGEMGD
2310 2320 2330 2340 2350
DGRDGIGGPG PKGRKGERGF VGYPGPKGGP GDRGGAGGPG PKGNRGRRGN
2360 2370 2380 2390 2400
AGNPGTPGQK GEIGYPGPSG LKGDKGPSIS QCALVQNIKD KCPCCYGPKE
2410 2420 2430 2440 2450
CPVFPTELAF AIDTSSGVGR DVFNRMKQTV LRVVSNLTIA ESNCPRGARV
2460 2470 2480 2490 2500
ALVTYNNEVT TEIRFADARK KSSLLQQIQN FQATLTTKPR SLETAMSFVA
2510 2520 2530 2540 2550
RNTFKRARSG FLMRKVAVFF SNGETRASPQ LNDAVLKLYD AGVTPVFLTS
2560 2570 2580 2590 2600
RQDAVLERAL EINNTAVGHA IILPTSGSQL NDTIRRLLTC HVCLDVCEPD
2610 2620 2630 2640 2650
PICGYGSQRP VFRDRRAAPT DVDTDIAFIM DSSASTTPLQ FNEMKKYISH
2660 2670 2680 2690 2700
LVSNMEISSE PKISQHHARV AVLQQAPYDH ETNSSFPPVK TEFSLTDYGS
2710 2720 2730 2740 2750
KEKIINYLHN QMTQLYGTMA MGSAVEHTVA HVFESAPNPR DLKVIVLMIT
2760 2770 2780 2790 2800
GKMEKQELEY LREAVIDAKC KGYLFVILGI GKNVDVKNIY SLASEPNDVF
2810 2820 2830 2840 2850
FKLVSKPGEL HEEPLLRFGR LLPSFIRSDF AFYLSPEIRK QCKWLQADQT
2860 2870 2880 2890 2900
PKSPGHTGQK AVYIAPNGTV TQTISTTTTL STTFKPAAST SAHAKTTTAS
2910 2920 2930 2940 2950
TTAQTRATER PTESTTVQVN ATVQSQGSTA ANTKATSRTT TSTTAAAASG
2960 2970 2980 2990 3000
RRRQGAKMND IQITDVTENS ARLRWASPEP HNAYVFDLAI TLAHDHSLVL
3010 3020 3030 3040 3050
KQNVTGTERV IGGLRSGQKY LVFITGYLKS QPKVTYTGTF STKTPAQPKV
3060 3070 3080 3090 3100
ALANMMLNAE PLEGPENVMD ICLLQKEEGT CRDFVLKWHY DLKTKSCARF
3110 3120 3130
WYGGCGGNEN RFNTQKECEK ACSPGNISPG VVTTIGT
Length:3,137
Mass (Da):339,619
Last modified:May 3, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3026080BFA98185F
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1D5PGD5A0A1D5PGD5_CHICK
Collagen alpha-3(VI) chain
COL6A3
3,128Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AADN04000203 Genomic DNA No translation available.

NCBI Reference Sequences

More...
RefSeqi
NP_990865.2, NM_205534.2

UniGene gene-oriented nucleotide sequence clusters

More...
UniGenei
Gga.888

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSGALT00000006250; ENSGALP00000006240; ENSGALG00000003923

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
396548

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
gga:396548

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN04000203 Genomic DNA No translation available.
RefSeqiNP_990865.2, NM_205534.2
UniGeneiGga.888

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Proteomic databases

PRIDEiF1P2F0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSGALT00000006250; ENSGALP00000006240; ENSGALG00000003923
GeneIDi396548
KEGGigga:396548

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
1293

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG41103QR LUCA
GeneTreeiENSGT00940000156462
KOiK06238
OMAiSYVHANH
OrthoDBi1049829at2759
TreeFamiTF337483

Enzyme and pathway databases

ReactomeiR-GGA-1442490 Collagen degradation
R-GGA-1650814 Collagen biosynthesis and modifying enzymes
R-GGA-186797 Signaling by PDGF
R-GGA-2022090 Assembly of collagen fibrils and other multimeric structures
R-GGA-216083 Integrin cell surface interactions
R-GGA-3000178 ECM proteoglycans
R-GGA-419037 NCAM1 interactions
R-GGA-8948216 Collagen chain trimerization

Gene expression databases

BgeeiENSGALG00000003923 Expressed in 9 organ(s), highest expression level in colon
ExpressionAtlasiF1P2F0 baseline and differential

Family and domain databases

CDDicd00063 FN3, 1 hit
cd00109 KU, 1 hit
Gene3Di2.60.40.10, 1 hit
3.40.50.410, 12 hits
4.10.410.10, 1 hit
InterProiView protein in InterPro
IPR008160 Collagen
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR013783 Ig-like_fold
IPR002223 Kunitz_BPTI
IPR036880 Kunitz_BPTI_sf
IPR020901 Prtase_inh_Kunz-CS
IPR002035 VWF_A
IPR036465 vWFA_dom_sf
PfamiView protein in Pfam
PF01391 Collagen, 3 hits
PF00014 Kunitz_BPTI, 1 hit
PF00092 VWA, 11 hits
PRINTSiPR00759 BASICPTASE
SMARTiView protein in SMART
SM00131 KU, 1 hit
SM00327 VWA, 12 hits
SUPFAMiSSF49265 SSF49265, 1 hit
SSF53300 SSF53300, 12 hits
SSF57362 SSF57362, 1 hit
PROSITEiView protein in PROSITE
PS00280 BPTI_KUNITZ_1, 1 hit
PS50279 BPTI_KUNITZ_2, 1 hit
PS50853 FN3, 1 hit
PS50234 VWFA, 12 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF1P2F0_CHICK
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F1P2F0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: February 13, 2019
This is version 65 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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