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UniProtKB - F1ND22 (F1ND22_CHICK)

Entry version 78 (25 May 2022)
Sequence version 2 (26 Jun 2013)
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Protein

IF rod domain-containing protein

Gene

NEFH

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
IF rod domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:NEFHImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiGallus gallus (Chicken)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9031 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Archelosauria › Archosauria › Dinosauria › Saurischia › Theropoda › Coelurosauria › Aves › Neognathae › Galloanserae › Galliformes › Phasianidae › Phasianinae › Gallus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000539 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 15

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Intermediate filamentUniRule annotationARBA annotation

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSGALG00000008085, Expressed in cerebellum and 4 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Complete GO annotation on QuickGO ...

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		9031.ENSGALP00000013107

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		F1ND22

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini74 – 384IF rodInterPro annotationAdd BLAST311

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni13 – 70DisorderedSequence analysisAdd BLAST58
Regioni303 – 325DisorderedSequence analysisAdd BLAST23
Regioni429 – 947DisorderedSequence analysisAdd BLAST519

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili78 – 112Sequence analysisAdd BLAST35
Coiled coili148 – 189Sequence analysisAdd BLAST42
Coiled coili194 – 214Sequence analysisAdd BLAST21
Coiled coili328 – 355Sequence analysisAdd BLAST28

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi308 – 325Basic and acidic residuesSequence analysisAdd BLAST18
Compositional biasi433 – 466Acidic residuesSequence analysisAdd BLAST34
Compositional biasi467 – 778Basic and acidic residuesSequence analysisAdd BLAST312
Compositional biasi793 – 838Basic and acidic residuesSequence analysisAdd BLAST46
Compositional biasi853 – 935Basic and acidic residuesSequence analysisAdd BLAST83

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the intermediate filament family.UniRule annotation

Keywords - Domaini

Coiled coilSequence analysisARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QYDU, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00940000161893

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_012560_7_2_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		F1ND22

Identification of Orthologs from Complete Genome Data

More...OMAi		IKMVEKS

Database of Orthologous Groups

More...OrthoDBi		898483at2759

TreeFam database of animal gene trees

More...TreeFami		TF330122

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR018039, IF_conserved
IPR039008, IF_rod_dom
IPR033183, NF-H

The PANTHER Classification System

More...PANTHERi		PTHR23214, PTHR23214, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00038, Filament, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM01391, Filament, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00226, IF_ROD_1, 1 hit
PS51842, IF_ROD_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

F1ND22-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSLVLEALLV PPGGLRKEPS RLAPRSAASS SGFHSWPGPP GTVGRARGGG 
        60         70         80         90        100
GGSAAASSTE SLDSLNGEPR ARNEKELLQV LNDRFAGYIE RVRALEQQNR 
       110        120        130        140        150
ALAAEAAALR QQQAGRSAMG ELYARELRDM RGALVRLGAE KGQLRLERAR 
       160        170        180        190        200
LAEDVAALRG RLEEEARQRA ELEAAARGLA QRSAQEERAR GPLAERARAL 
       210        220        230        240        250
REEAELLRKQ HQEEVGALLR GARAELPAEP PASLRPGVTA ALRDLREQLE 
       260        270        280        290        300
GTAARSTLQA EEWFRVRLDK LSEVAKVNTD AMRVAQEEIS EYRRQLQSKT 
       310        320        330        340        350
TELEALKGTQ ESLERQRQDS EERHHADVLS YQETIQQLDN ELRNTKWEMA 
       360        370        380        390        400
AQLREYQDLL NVKMALDIEI AAYRKLLEGE EYRIETGFGM VSYPEVVPKA 
       410        420        430        440        450
PSIAANIKVK SEEKIKVVEK SEKETVIVEE QTEEIQVTEE VTEEEEAEKE 
       460        470        480        490        500
AEEEKAEEEK EEEKAEPEGE EEAKSPEKPE SPTKEEAKSP AVKSPEKPST 
       510        520        530        540        550
PSKEEAKSPT VKSPEKPSTP SKEEAKSPTV KSPEKPSTPS KEEDKSPAVK 
       560        570        580        590        600
SPEKPSTPSK EEAKSPAVKS PEKPSTPSKE EAKSPAVKSP EKPAPPSKEE 
       610        620        630        640        650
AKSPAVKSPE KPPVPSKEEA KSPPVKSPEK PATPLKEEAK TPTVKSPEKP 
       660        670        680        690        700
PTPTKEETKP PSVKSPEKPP TALKEEAKSP AVKSPEKPAT PSKEEAKSPA 
       710        720        730        740        750
VKSPEKPSTP PKEEAKTPAV KSPEKPTPPS KEEAKTPAAK SPEKPVSPSK 
       760        770        780        790        800
EEAKTPTVKS PEKAKSPAKE EAKSPQKEAA PAKEPVPAPP KEPKAPAKEE 
       810        820        830        840        850
QPKEEKAPPK PAAEGRKDEA PKKDAPAKAE EKPKEKAAAG PEPPAPQVKE 
       860        870        880        890        900
TKAASKPAEE GKAEKDAQPK PQQEGGKAAV KEPEKPKAEE KVEEPKKTVE 
       910        920        930        940 
EPKKEKVEDP KSKPKDDSKA SKEPPKAEKP PSKEGKAPEP APAVGKK
Length:947
Mass (Da):102,952
Last modified:June 26, 2013 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iA4D217A90DD2A1C7
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AADN05000505 Genomic DNA No translation available.

NCBI Reference Sequences

More...RefSeqi		XP_415310.4, XM_415310.5

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSGALT00000013122; ENSGALP00000013107; ENSGALG00000008085

Database of genes from NCBI RefSeq genomes

More...GeneIDi		417020

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		gga:417020

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN05000505 Genomic DNA No translation available.
RefSeqiXP_415310.4, XM_415310.5

3D structure databases

SMRiF1ND22
ModBaseiSearch...

Protein-protein interaction databases

STRINGi9031.ENSGALP00000013107

Genome annotation databases

EnsembliENSGALT00000013122; ENSGALP00000013107; ENSGALG00000008085
GeneIDi417020
KEGGigga:417020

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		4744

Phylogenomic databases

eggNOGiENOG502QYDU, Eukaryota
GeneTreeiENSGT00940000161893
HOGENOMiCLU_012560_7_2_1
InParanoidiF1ND22
OMAiIKMVEKS
OrthoDBi898483at2759
TreeFamiTF330122

Gene expression databases

BgeeiENSGALG00000008085, Expressed in cerebellum and 4 other tissues

Family and domain databases

InterProiView protein in InterPro
IPR018039, IF_conserved
IPR039008, IF_rod_dom
IPR033183, NF-H
PANTHERiPTHR23214, PTHR23214, 1 hit
PfamiView protein in Pfam
PF00038, Filament, 1 hit
SMARTiView protein in SMART
SM01391, Filament, 1 hit
PROSITEiView protein in PROSITE
PS00226, IF_ROD_1, 1 hit
PS51842, IF_ROD_2, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF1ND22_CHICK
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F1ND22
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: June 26, 2013
Last modified: May 25, 2022
This is version 78 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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