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UniProtKB - F1N0Y1 (F1N0Y1_BOVIN)

Entry version 79 (29 Sep 2021)
Sequence version 3 (10 Apr 2019)
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Protein
Submitted name:

Scribble planar cell polarity protein

Gene

SCRIB

Organism
Bos taurus (Bovine)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Scribble planar cell polarity proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:SCRIBImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBos taurus (Bovine)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9913 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Artiodactyla › Ruminantia › Pecora › Bovidae › Bovinae › Bos
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000009136 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 14

Organism-specific databases

Eukaryotic Pathogen, Vector and Host Database Resources

More...VEuPathDBi		HostDB:ENSBTAG00000008421

Vertebrate Gene Nomenclature Database

More...VGNCi		VGNC:34365, SCRIB

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		F1N0Y1

PRoteomics IDEntifications database

More...PRIDEi		F1N0Y1

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSBTAG00000008421, Expressed in saliva-secreting gland and 99 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		F1N0Y1, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		9913.ENSBTAP00000011082

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini716 – 803PDZInterPro annotationAdd BLAST88
Domaini850 – 938PDZInterPro annotationAdd BLAST89
Domaini986 – 1075PDZInterPro annotationAdd BLAST90
Domaini1082 – 1170PDZInterPro annotationAdd BLAST89

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni452 – 601DisorderedSequence analysisAdd BLAST150
Regioni633 – 690DisorderedSequence analysisAdd BLAST58
Regioni820 – 847DisorderedSequence analysisAdd BLAST28
Regioni938 – 969DisorderedSequence analysisAdd BLAST32
Regioni1241 – 1264DisorderedSequence analysisAdd BLAST24
Regioni1284 – 1438DisorderedSequence analysisAdd BLAST155
Regioni1465 – 1578DisorderedSequence analysisAdd BLAST114

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi460 – 496Basic and acidic residuesSequence analysisAdd BLAST37
Compositional biasi562 – 586Basic and acidic residuesSequence analysisAdd BLAST25
Compositional biasi658 – 678Acidic residuesSequence analysisAdd BLAST21
Compositional biasi941 – 968Pro residuesSequence analysisAdd BLAST28
Compositional biasi1250 – 1264Pro residuesSequence analysisAdd BLAST15
Compositional biasi1332 – 1353Basic and acidic residuesSequence analysisAdd BLAST22

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the LAP (LRR and PDZ) protein family.ARBA annotation

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Leucine-rich repeatARBA annotation, RepeatARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG0619, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00940000154025

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_000288_18_20_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		F1N0Y1

TreeFam database of animal gene trees

More...TreeFami		TF351429

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.30.42.10, 4 hits
3.80.10.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf
IPR001478, PDZ
IPR036034, PDZ_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF13855, LRR_8, 2 hits
PF00595, PDZ, 4 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00369, LRR_TYP, 12 hits
SM00228, PDZ, 4 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF50156, SSF50156, 4 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51450, LRR, 3 hits
PS50106, PDZ, 4 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

F1N0Y1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLKCIPLWRC NRHVESVDKR HCSLQAVPEE IYRYSRSLEE LLLDANQLRE 
        60         70         80         90        100
LPKPFFRLLN LRKLGLSDNE IQRLPPEVAN FMQLVELDVS RNDIPEIPES 
       110        120        130        140        150
IKFCKALEIA DFSGNPLSRL PEGFTQLRSL AHLALNDVSL QALPGDVGNL 
       160        170        180        190        200
ANLVTLELRE NLLKSLPASL SFLVKLEQLD LGGNDLEVLP DTLGALPNLR 
       210        220        230        240        250
ELWLDRNQLS ALPPELGNLR RLVCLDVSEN RLEELPAELG GLVLLTDLLL 
       260        270        280        290        300
SQNLLQRLPD GIGQLKQLSI LKVDQNRLCE VTEAIGDCEN LSELILTENL 
       310        320        330        340        350
LTALPHSLGK LTKLTNLNVD RNHLEALPPE IGGCVALSVL SLRDNRLAVL 
       360        370        380        390        400
PPELAHTAEL HVLDVAGNRL QSLPFALTHL NLKALWLAEN QAQPMLRFQT 
       410        420        430        440        450
EDDAQTGEKV LTCYLLPQQP LPSLEDPELQ SSPSESWGDA PLSRVSVIQF 
       460        470        480        490        500
LEAPAGDDDP EEAAAEKRGL QRRATPHPSE LKVMKRGVER RSEATSCRPD 
       510        520        530        540        550
PAPPSPSEEE KRLSTESGLS ADSHLSAGTV SQGEPEGPLA EEEGLSQQEP 
       560        570        580        590        600
MPATQEEVME ETYEEPTVRF AEDTLLLPRE DGESEEGQPE APWPLPGGRQ 
       610        620        630        640        650
RLIRKDTPHY KKHFKISKLP QPEAVVALLQ GTPPDNEGPV GTGGWHNGPH 
       660        670        680        690        700
MSWAPRAEEE EEEEEDEAEE EEEGEAAAAA EEEKAVASAP SVKGVSFDQA 
       710        720        730        740        750
NNLLIEPARI EEEELTLTIV RQTGGLGISI AGGKGSTPYK GDDEGIFISR 
       760        770        780        790        800
VSEEGPAARA GVRVGDKLLE VNGVALQDAE HQQAVEALRG AGATVHMRLW 
       810        820        830        840        850
RERMVEPENA VTVTALRPED DYSPRERRGG GLRLPLLPPE PPGPPRQRHV 
       860        870        880        890        900
ACLVRSEKGL GFSIAGGKGS TPYRAGDGGI FISRIAEGGA AHRAGTLQVG 
       910        920        930        940        950
DRVLSINGVD MTEARHDHAV SLLTAASPTI ALLLEREAGG PLAPSPPPHS 
       960        970        980        990       1000
PPPPTATPAT PGEPGPLRLP PSLLAAALEG PYPVEEICLP RAGGPLGLSI 
      1010       1020       1030       1040       1050
VGGSDHSSHP FGVQEPGVFI SKVLPRGLAA RSGLRVGDRI LAVNGQDVRE 
      1060       1070       1080       1090       1100
ATHQEAVSAL LRPCLELVLL VRRDPPPPGM RELCIQKAPG ERLGISIRGG 
      1110       1120       1130       1140       1150
AKGHAGNPCD PTDEGIFISK VSPTGAAGRD GRLRVGLRLL EVNQQSLLGL 
      1160       1170       1180       1190       1200
THGEAVQLLR SVGDTLTVLV CDGFDTSAAT PEVSPGIIAN PFAAGLGRRN 
      1210       1220       1230       1240       1250
SLESISSIDR ELSPEGPGKE KELPGQIPLW GPEAMVLPAA SGEMAEPPCS 
      1260       1270       1280       1290       1300
PSHQQPPSPP SPAELPANVK QAYRTFAAVP GLHPPLDTPA QHPMLGPTAS 
      1310       1320       1330       1340       1350
PEQLSFRERQ KYFELEVRVP QAEGPPKRVS LVGADDLRKM QEEEARKLQQ 
      1360       1370       1380       1390       1400
KRAQMLREAA ANTGLPEADA PEDEEPEEEP PWAGQGPMAE GLGPASPPPQ 
      1410       1420       1430       1440       1450
GGGAPVRTAK AERRHQERLR VQSPELPAPE RALSPAERRA LEAEKRALWR 
      1460       1470       1480       1490       1500
AARMKSLEQD ALRAQMVLSK SQDGRSKRGP LERLAEAPSP APTPSPTPLE 
      1510       1520       1530       1540       1550
DLGPQTGTSP GRLSPDFAEE LRSLEPPPSP GLPEEDGEVA MVLLGRPSPS 
      1560       1570 
STGPEEVALC SSRRAVRPGR RGLGPVPS
Length:1,578
Mass (Da):169,928
Last modified:April 10, 2019 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i986F902E2D45EC40
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A3Q1LUY1A0A3Q1LUY1_BOVIN
Scribble planar cell polarity prote...
SCRIB
1,603Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A3Q1MAJ4A0A3Q1MAJ4_BOVIN
Scribble planar cell polarity prote...
SCRIB
1,541Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSBTAT00000011082; ENSBTAP00000011082; ENSBTAG00000008421

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000011082

Proteomic databases

PaxDbiF1N0Y1
PRIDEiF1N0Y1

Genome annotation databases

EnsembliENSBTAT00000011082; ENSBTAP00000011082; ENSBTAG00000008421

Organism-specific databases

VEuPathDBiHostDB:ENSBTAG00000008421
VGNCiVGNC:34365, SCRIB

Phylogenomic databases

eggNOGiKOG0619, Eukaryota
GeneTreeiENSGT00940000154025
HOGENOMiCLU_000288_18_20_1
InParanoidiF1N0Y1
TreeFamiTF351429

Gene expression databases

BgeeiENSBTAG00000008421, Expressed in saliva-secreting gland and 99 other tissues
ExpressionAtlasiF1N0Y1, baseline and differential

Family and domain databases

Gene3Di2.30.42.10, 4 hits
3.80.10.10, 2 hits
InterProiView protein in InterPro
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf
IPR001478, PDZ
IPR036034, PDZ_sf
PfamiView protein in Pfam
PF13855, LRR_8, 2 hits
PF00595, PDZ, 4 hits
SMARTiView protein in SMART
SM00369, LRR_TYP, 12 hits
SM00228, PDZ, 4 hits
SUPFAMiSSF50156, SSF50156, 4 hits
PROSITEiView protein in PROSITE
PS51450, LRR, 3 hits
PS50106, PDZ, 4 hits

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF1N0Y1_BOVIN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F1N0Y1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 10, 2019
Last modified: September 29, 2021
This is version 79 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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