Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Neuronal PAS domain protein 2

Gene

Npas2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Neuronal PAS domain protein 2Imported
Gene namesi
Name:Npas2Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 9

Organism-specific databases

RGDi1309681 Npas2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiF1MAG2
PRIDEiF1MAG2

Expressioni

Gene expression databases

BgeeiENSRNOG00000013408 Expressed in 9 organ(s), highest expression level in brain
GenevisibleiF1MAG2 RN

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000056327

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 59BHLHInterPro annotationAdd BLAST51
Domaini82 – 145PASInterPro annotationAdd BLAST64
Domaini260 – 307PASInterPro annotationAdd BLAST48

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili510 – 530Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis, RepeatSAAS annotation

Phylogenomic databases

eggNOGiENOG410IQ5V Eukaryota
ENOG410Y7Z8 LUCA
GeneTreeiENSGT00760000118788
InParanoidiF1MAG2
KOiK09026
OMAiYKMLSSH
OrthoDBiEOG091G11CV
PhylomeDBiF1MAG2
TreeFamiTF324568

Family and domain databases

CDDicd00083 HLH, 1 hit
cd00130 PAS, 2 hits
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR001067 Nuc_translocat
IPR001610 PAC
IPR000014 PAS
IPR035965 PAS-like_dom_sf
IPR013767 PAS_fold
PfamiView protein in Pfam
PF00010 HLH, 1 hit
PF00989 PAS, 1 hit
PRINTSiPR00785 NCTRNSLOCATR
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SM00086 PAC, 1 hit
SM00091 PAS, 2 hits
SUPFAMiSSF47459 SSF47459, 1 hit
SSF55785 SSF55785, 2 hits
TIGRFAMsiTIGR00229 sensory_box, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
PS50112 PAS, 2 hits

Sequencei

Sequence statusi: Complete.

F1MAG2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDEDEKDRAK RASRNKSEKK RRDQFNVLIK ELSSMLPGNT RKLDKTTVLE
60 70 80 90 100
KVIGFLQKHN EVSAQTEICD IQQDWKPSFL SNEEFTQLML EALDGFVIVV
110 120 130 140 150
TTDGSIIYVS DSITPLLGHL PSDVMDQNLL NFLPEQEHSE VYKILSSHML
160 170 180 190 200
VTDSPSPEFL KSDNDLEFYC HLLRGSLNPK EFPTYEYIKF VGNFRSYNNV
210 220 230 240 250
PSPSCNGFDN TLSRPCRVPL GKEVCFIATV RLATPQFLKE MCVADEPLEE
260 270 280 290 300
FTSRHSLEWK FLFLDHRAPP IIGYLPFEVL GTSGYDYYHI DDLELLARCH
310 320 330 340 350
QHLMQFGKGK SCCYRFLTKG QQWIWLQTHY YITYHQWNSK PEFIVCTHSV
360 370 380 390 400
VSYADVRVER RQELALEDPP TEAMHPSALK EKDSSLEPQP HFNALDMGAS
410 420 430 440 450
GLTSSPSPSA SSRSSHKSSH TAMSEPTSTP TKLMAENSTT ALPRSATLPQ
460 470 480 490 500
ELPVQGLSQA ATMPAPLLSS SSCDLAKQLL PQSLPQTVLQ SPPAPVTQFS
510 520 530 540 550
AQFSMFQTIK DQLEQRTRIL QANIRWQQEE LHKIQEQLCL VQDSNVQMFL
560 570 580 590 600
QQPAVSLSFS GAQRPAAQQP LQQRPSAPSQ PPLVVNTPLP GQITSTQVTN
610 620 630 640 650
QHLLRESNVM SAQGPKPIRS SQLLPASSRS LSSLPSQFSS TASVLPPGLS
660 670 680 690 700
LTTVAPTPQD TSQCQPSPDF GHDRQLRLLL SQPIQPMMPG SCDARQPSEV
710 720 730 740 750
SRTGRQVKYA QSQVTFPSPD SHPTSSSAPT PVLLMGQAVL HPGFPASQPS
760 770 780 790 800
PLQPTQVQQQ PPPYLQAPTS LHSEQPDSLL LSTFSQQPAP LGYAATQPTQ
810
PQPPRPSRRV SRLSES
Length:816
Mass (Da):90,849
Last modified:May 3, 2011 - v1
Checksum:i5C6634E6FD64A590
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07067441 Genomic DNA No translation available.
AABR07067442 Genomic DNA No translation available.
AABR07067443 Genomic DNA No translation available.
AABR07067444 Genomic DNA No translation available.
RefSeqiNP_001101684.2, NM_001108214.2
XP_008765253.1, XM_008767031.2
XP_008765254.1, XM_008767032.2
XP_008765255.1, XM_008767033.2
UniGeneiRn.8285

Genome annotation databases

EnsembliENSRNOT00000059571; ENSRNOP00000056327; ENSRNOG00000013408
GeneIDi316351
KEGGirno:316351
UCSCiRGD:1309681 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07067441 Genomic DNA No translation available.
AABR07067442 Genomic DNA No translation available.
AABR07067443 Genomic DNA No translation available.
AABR07067444 Genomic DNA No translation available.
RefSeqiNP_001101684.2, NM_001108214.2
XP_008765253.1, XM_008767031.2
XP_008765254.1, XM_008767032.2
XP_008765255.1, XM_008767033.2
UniGeneiRn.8285

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000056327

Proteomic databases

PaxDbiF1MAG2
PRIDEiF1MAG2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000059571; ENSRNOP00000056327; ENSRNOG00000013408
GeneIDi316351
KEGGirno:316351
UCSCiRGD:1309681 rat

Organism-specific databases

CTDi4862
RGDi1309681 Npas2

Phylogenomic databases

eggNOGiENOG410IQ5V Eukaryota
ENOG410Y7Z8 LUCA
GeneTreeiENSGT00760000118788
InParanoidiF1MAG2
KOiK09026
OMAiYKMLSSH
OrthoDBiEOG091G11CV
PhylomeDBiF1MAG2
TreeFamiTF324568

Gene expression databases

BgeeiENSRNOG00000013408 Expressed in 9 organ(s), highest expression level in brain
GenevisibleiF1MAG2 RN

Family and domain databases

CDDicd00083 HLH, 1 hit
cd00130 PAS, 2 hits
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR001067 Nuc_translocat
IPR001610 PAC
IPR000014 PAS
IPR035965 PAS-like_dom_sf
IPR013767 PAS_fold
PfamiView protein in Pfam
PF00010 HLH, 1 hit
PF00989 PAS, 1 hit
PRINTSiPR00785 NCTRNSLOCATR
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SM00086 PAC, 1 hit
SM00091 PAS, 2 hits
SUPFAMiSSF47459 SSF47459, 1 hit
SSF55785 SSF55785, 2 hits
TIGRFAMsiTIGR00229 sensory_box, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
PS50112 PAS, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiF1MAG2_RAT
AccessioniPrimary (citable) accession number: F1MAG2
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: November 7, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again