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Protein
Submitted name:

RCG24561

Gene

Zscan2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • DNA-binding transcription factor activity Source: GO_Central
  • metal ion binding Source: UniProtKB-KW
  • sequence-specific DNA binding Source: GO_Central

GO - Biological processi

Keywordsi

Biological processTranscription, Transcription regulationSAAS annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
RCG24561Imported
Submitted name:
Zinc finger and SCAN domain-containing 2Imported
Gene namesi
Name:Zscan2Imported
Synonyms:LOC683603Imported
ORF Names:rCG_24561Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi1584548 Zscan2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PRIDEiF1M9Z0

Expressioni

Gene expression databases

BgeeiENSRNOG00000022164 Expressed in 9 organ(s), highest expression level in testis

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000029851

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini69 – 127SCAN boxInterPro annotationAdd BLAST59
Domaini222 – 249C2H2-typeInterPro annotationAdd BLAST28
Domaini250 – 277C2H2-typeInterPro annotationAdd BLAST28
Domaini278 – 305C2H2-typeInterPro annotationAdd BLAST28
Domaini306 – 333C2H2-typeInterPro annotationAdd BLAST28
Domaini334 – 361C2H2-typeInterPro annotationAdd BLAST28
Domaini362 – 389C2H2-typeInterPro annotationAdd BLAST28
Domaini390 – 417C2H2-typeInterPro annotationAdd BLAST28
Domaini418 – 445C2H2-typeInterPro annotationAdd BLAST28
Domaini446 – 473C2H2-typeInterPro annotationAdd BLAST28
Domaini474 – 501C2H2-typeInterPro annotationAdd BLAST28
Domaini502 – 529C2H2-typeInterPro annotationAdd BLAST28
Domaini530 – 557C2H2-typeInterPro annotationAdd BLAST28
Domaini558 – 585C2H2-typeInterPro annotationAdd BLAST28
Domaini586 – 613C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

RepeatSAAS annotation, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00930000150882
KOiK09230
OMAiIAHQGTH
OrthoDBiEOG091G02KC

Family and domain databases

CDDicd07936 SCAN, 1 hit
Gene3Di1.10.4020.10, 1 hit
InterProiView protein in InterPro
IPR003309 SCAN_dom
IPR038269 SCAN_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF02023 SCAN, 1 hit
PF00096 zf-C2H2, 14 hits
SMARTiView protein in SMART
SM00431 SCAN, 1 hit
SM00355 ZnF_C2H2, 14 hits
SUPFAMiSSF57667 SSF57667, 8 hits
PROSITEiView protein in PROSITE
PS50804 SCAN_BOX, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 14 hits
PS50157 ZINC_FINGER_C2H2_2, 14 hits

Sequencei

Sequence statusi: Complete.

F1M9Z0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAAEVPAVST PLSPLAQVPQ EEDEQAEVTT MILEDDSWVQ EAVLQEDGPE
60 70 80 90 100
SEPFPQSTGK GSPQEEGTAE GPRGALVRFR ELCRRWLRPE VHTKEQMLTV
110 120 130 140 150
LPREIQAWLQ EHRPESSEEA VALVEDLTQT FPHNDFEIQS ENGENSNQDV
160 170 180 190 200
FEDVESHETF LKIPGGEGGQ QSDGESDFER DCGSGGAQGN VPGEEHRDLP
210 220 230 240 250
SEGREVGQLI GLQGTYLGEK PYECPQCGKT FSRKSHLITH ERTHTGEKYY
260 270 280 290 300
KCEECGKSFS DGSNFSRHQT THTGEKPYKC RDCGKSFSRS ANLITHQRIH
310 320 330 340 350
TGEKPFQCAE CGKSFSRSPN LIAHQRTHTG EKPYSCPECG KSFGNRSSLN
360 370 380 390 400
THQGIHTGEK PYACKECGES FSYNSNLIRH QRIHTGEKPY KCTECGQKFS
410 420 430 440 450
QSSALITHRR THTGEKPYQC SECGKSFSRS SNLATHRRTH LVEKPYKCGV
460 470 480 490 500
CGKSFSQSSS LIAHQGMHTG EKPYECLTCG ESFSWSSNLI KHQRIHTGEK
510 520 530 540 550
PYKCGDCGKC FSQRSQLVVH QRTHTGEKPY QCLMCGKSFS RGSILVMHQR
560 570 580 590 600
AHLGEKPYRC PECGKGFSWN SVLIIHQRIH TGEKPYKCPE CGKGFSNSSN
610
FITHQRTHLK EKLY
Length:614
Mass (Da):68,944
Last modified:April 3, 2013 - v2
Checksum:iB821539D8CEC6052
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei614Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07004430 Genomic DNA No translation available.
AABR07004431 Genomic DNA No translation available.
CH473980 Genomic DNA Translation: EDM08659.1
RefSeqiXP_001066711.1, XM_001066711.6
XP_003748938.1, XM_003748890.4
XP_006223427.1, XM_006223365.3
XP_006223428.1, XM_006223366.3
XP_006223429.1, XM_006223367.3
XP_006229527.1, XM_006229465.3
XP_006229528.1, XM_006229466.3
XP_006229529.1, XM_006229467.3
XP_008757814.1, XM_008759592.2
XP_008757815.1, XM_008759593.2
XP_008772820.1, XM_008774598.2
XP_008772821.1, XM_008774599.2

Genome annotation databases

EnsembliENSRNOT00000034267; ENSRNOP00000029851; ENSRNOG00000022164
GeneIDi683603
KEGGirno:683603

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07004430 Genomic DNA No translation available.
AABR07004431 Genomic DNA No translation available.
CH473980 Genomic DNA Translation: EDM08659.1
RefSeqiXP_001066711.1, XM_001066711.6
XP_003748938.1, XM_003748890.4
XP_006223427.1, XM_006223365.3
XP_006223428.1, XM_006223366.3
XP_006223429.1, XM_006223367.3
XP_006229527.1, XM_006229465.3
XP_006229528.1, XM_006229466.3
XP_006229529.1, XM_006229467.3
XP_008757814.1, XM_008759592.2
XP_008757815.1, XM_008759593.2
XP_008772820.1, XM_008774598.2
XP_008772821.1, XM_008774599.2

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000029851

Proteomic databases

PRIDEiF1M9Z0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000034267; ENSRNOP00000029851; ENSRNOG00000022164
GeneIDi683603
KEGGirno:683603

Organism-specific databases

CTDi54993
RGDi1584548 Zscan2

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00930000150882
KOiK09230
OMAiIAHQGTH
OrthoDBiEOG091G02KC

Gene expression databases

BgeeiENSRNOG00000022164 Expressed in 9 organ(s), highest expression level in testis

Family and domain databases

CDDicd07936 SCAN, 1 hit
Gene3Di1.10.4020.10, 1 hit
InterProiView protein in InterPro
IPR003309 SCAN_dom
IPR038269 SCAN_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF02023 SCAN, 1 hit
PF00096 zf-C2H2, 14 hits
SMARTiView protein in SMART
SM00431 SCAN, 1 hit
SM00355 ZnF_C2H2, 14 hits
SUPFAMiSSF57667 SSF57667, 8 hits
PROSITEiView protein in PROSITE
PS50804 SCAN_BOX, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 14 hits
PS50157 ZINC_FINGER_C2H2_2, 14 hits
ProtoNetiSearch...

Entry informationi

Entry nameiF1M9Z0_RAT
AccessioniPrimary (citable) accession number: F1M9Z0
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: November 7, 2018
This is version 66 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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