Zscan2

Functionⁱ

GO - Molecular functionⁱ

DNA-binding transcription factor activity
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635
metal ion binding Source: UniProtKB-KW
sequence-specific DNA binding
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

negative regulation of transcription, DNA-templated
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635
positive regulation of transcription, DNA-templated
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635
positive regulation of transcription by RNA polymerase II
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Biological process	Transcription, Transcription regulationSAAS annotation
Ligand	Metal-binding, Zinc

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: RCG24561Imported Submitted name: Zinc finger and SCAN domain-containing 2Imported
Gene namesⁱ	Name:Zscan2Imported Synonyms:LOC683603Imported ORF Names:rCG_24561Imported
Organismⁱ	Rattus norvegicus (Rat)Imported
Taxonomic identifierⁱ	10116 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus
Proteomesⁱ	UP000002494 Componentⁱ: Chromosome 1

Organism-specific databases

Rat genome database More...RGDⁱ	1584548 Zscan2

RGDⁱ

1584548 Zscan2

Keywords - Cellular componentⁱ

NucleusPROSITE-ProRule annotationSAAS annotation

PTM / Processingⁱ

Proteomic databases

PRIDEⁱ	F1M9Z0

PRIDEⁱ

F1M9Z0

Expressionⁱ

Gene expression databases

Bgeeⁱ	ENSRNOG00000022164 Expressed in 9 organ(s), highest expression level in testis

Bgeeⁱ

ENSRNOG00000022164 Expressed in 9 organ(s), highest expression level in testis

Interactionⁱ

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000029851

STRINGⁱ

10116.ENSRNOP00000029851

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Length
Domainⁱ	69 – 127	SCAN boxInterPro annotationAdd BLAST	59
Domainⁱ	222 – 249	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	250 – 277	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	278 – 305	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	306 – 333	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	334 – 361	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	362 – 389	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	390 – 417	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	418 – 445	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	446 – 473	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	474 – 501	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	502 – 529	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	530 – 557	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	558 – 585	C2H2-typeInterPro annotationAdd BLAST	28
Domainⁱ	586 – 613	C2H2-typeInterPro annotationAdd BLAST	28

Keywords - Domainⁱ

RepeatSAAS annotation, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGⁱ	KOG1721 Eukaryota COG5048 LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00930000150882
KEGG Orthology (KO) More...KOⁱ	K09230
OMAⁱ	IAHQGTH
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G02KC

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd07936 SCAN, 1 hit
Gene3Dⁱ	1.10.4020.10, 1 hit
InterProⁱ	View protein in InterPro IPR003309 SCAN_dom IPR038269 SCAN_sf IPR036236 Znf_C2H2_sf IPR013087 Znf_C2H2_type
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF02023 SCAN, 1 hit PF00096 zf-C2H2, 14 hits
SMARTⁱ	View protein in SMART SM00431 SCAN, 1 hit SM00355 ZnF_C2H2, 14 hits
SUPFAMⁱ	SSF57667 SSF57667, 8 hits
PROSITEⁱ	View protein in PROSITE PS50804 SCAN_BOX, 1 hit PS00028 ZINC_FINGER_C2H2_1, 14 hits PS50157 ZINC_FINGER_C2H2_2, 14 hits

Sequenceⁱ

Sequence statusⁱ: Complete.

F1M9Z0-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MAAEVPAVST PLSPLAQVPQ EEDEQAEVTT MILEDDSWVQ EAVLQEDGPE 
        60         70         80         90        100
SEPFPQSTGK GSPQEEGTAE GPRGALVRFR ELCRRWLRPE VHTKEQMLTV 
       110        120        130        140        150
LPREIQAWLQ EHRPESSEEA VALVEDLTQT FPHNDFEIQS ENGENSNQDV 
       160        170        180        190        200
FEDVESHETF LKIPGGEGGQ QSDGESDFER DCGSGGAQGN VPGEEHRDLP 
       210        220        230        240        250
SEGREVGQLI GLQGTYLGEK PYECPQCGKT FSRKSHLITH ERTHTGEKYY 
       260        270        280        290        300
KCEECGKSFS DGSNFSRHQT THTGEKPYKC RDCGKSFSRS ANLITHQRIH 
       310        320        330        340        350
TGEKPFQCAE CGKSFSRSPN LIAHQRTHTG EKPYSCPECG KSFGNRSSLN 
       360        370        380        390        400
THQGIHTGEK PYACKECGES FSYNSNLIRH QRIHTGEKPY KCTECGQKFS 
       410        420        430        440        450
QSSALITHRR THTGEKPYQC SECGKSFSRS SNLATHRRTH LVEKPYKCGV 
       460        470        480        490        500
CGKSFSQSSS LIAHQGMHTG EKPYECLTCG ESFSWSSNLI KHQRIHTGEK 
       510        520        530        540        550
PYKCGDCGKC FSQRSQLVVH QRTHTGEKPY QCLMCGKSFS RGSILVMHQR 
       560        570        580        590        600
AHLGEKPYRC PECGKGFSWN SVLIIHQRIH TGEKPYKCPE CGKGFSNSSN 
       610 
FITHQRTHLK EKLY

Length:614

Mass (Da):68,944

Last modified:April 3, 2013 - v2

Checksum:ⁱB821539D8CEC6052

GO

Experimental Info

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Non-terminal residueⁱ	614	Imported		1

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AABR07004430 Genomic DNA No translation available. AABR07004431 Genomic DNA No translation available. CH473980 Genomic DNA Translation: EDM08659.1
NCBI Reference Sequences More...RefSeqⁱ	XP_001066711.1, XM_001066711.6 XP_003748938.1, XM_003748890.4 XP_006223427.1, XM_006223365.3 XP_006223428.1, XM_006223366.3 XP_006223429.1, XM_006223367.3 XP_006229527.1, XM_006229465.3 XP_006229528.1, XM_006229466.3 XP_006229529.1, XM_006229467.3 XP_008757814.1, XM_008759592.2 XP_008757815.1, XM_008759593.2 XP_008772820.1, XM_008774598.2 XP_008772821.1, XM_008774599.2

Genome annotation databases

Ensemblⁱ	ENSRNOT00000034267; ENSRNOP00000029851; ENSRNOG00000022164
GeneIDⁱ	683603
KEGGⁱ	rno:683603

Similar proteinsⁱ

90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
F1M9Z0	Zinc finger and SCAN domain-containing protein 2	)	MOUSE		614	UniRef90_Q07230
Zinc finger and SCAN domain-containing protein 2		CRIGR		635
Uncharacterized protein		ICTTR		611
zinc finger and SCAN domain-containing protein 2		MESAU		610
UPI00042AA2F5		PERMB		616
+12

Protein	Similar proteins		Species	Score	Length	Source
F1M9Z0	Zinc finger and SCAN domain-containing protein 2	)	MOUSE		614	UniRef50_Q07230
Zinc finger and SCAN domain-containing protein 2		PONAB		645
Zinc finger and SCAN domain-containing protein 2		CRIGR		635
Uncharacterized protein		ICTTR		611
zinc finger and SCAN domain-containing protein 2		MESAU		610
+88

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AABR07004430 Genomic DNA No translation available. AABR07004431 Genomic DNA No translation available. CH473980 Genomic DNA Translation: EDM08659.1
RefSeqⁱ	XP_001066711.1, XM_001066711.6 XP_003748938.1, XM_003748890.4 XP_006223427.1, XM_006223365.3 XP_006223428.1, XM_006223366.3 XP_006223429.1, XM_006223367.3 XP_006229527.1, XM_006229465.3 XP_006229528.1, XM_006229466.3 XP_006229529.1, XM_006229467.3 XP_008757814.1, XM_008759592.2 XP_008757815.1, XM_008759593.2 XP_008772820.1, XM_008774598.2 XP_008772821.1, XM_008774599.2

3D structure databases

ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

STRINGⁱ	10116.ENSRNOP00000029851

STRINGⁱ

10116.ENSRNOP00000029851

Proteomic databases

PRIDEⁱ	F1M9Z0

PRIDEⁱ

F1M9Z0

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSRNOT00000034267; ENSRNOP00000029851; ENSRNOG00000022164
GeneIDⁱ	683603
KEGGⁱ	rno:683603

Organism-specific databases

CTDⁱ	54993
RGDⁱ	1584548 Zscan2

Phylogenomic databases

eggNOGⁱ	KOG1721 Eukaryota COG5048 LUCA
GeneTreeⁱ	ENSGT00930000150882
KOⁱ	K09230
OMAⁱ	IAHQGTH
OrthoDBⁱ	EOG091G02KC

Gene expression databases

Bgeeⁱ	ENSRNOG00000022164 Expressed in 9 organ(s), highest expression level in testis

Bgeeⁱ

ENSRNOG00000022164 Expressed in 9 organ(s), highest expression level in testis

Family and domain databases

CDDⁱ	cd07936 SCAN, 1 hit
Gene3Dⁱ	1.10.4020.10, 1 hit
InterProⁱ	View protein in InterPro IPR003309 SCAN_dom IPR038269 SCAN_sf IPR036236 Znf_C2H2_sf IPR013087 Znf_C2H2_type
Pfamⁱ	View protein in Pfam PF02023 SCAN, 1 hit PF00096 zf-C2H2, 14 hits
SMARTⁱ	View protein in SMART SM00431 SCAN, 1 hit SM00355 ZnF_C2H2, 14 hits
SUPFAMⁱ	SSF57667 SSF57667, 8 hits
PROSITEⁱ	View protein in PROSITE PS50804 SCAN_BOX, 1 hit PS00028 ZINC_FINGER_C2H2_1, 14 hits PS50157 ZINC_FINGER_C2H2_2, 14 hits
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	F1M9Z0_RAT
Accessionⁱ	F1M9Z0Primary (citable) accession number: F1M9Z0
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	May 3, 2011
	Last sequence update:	April 3, 2013
	Last modified:	November 7, 2018
	This is version 66 of the entry and version 2 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteomeImported

UniProtKB

UniParc

Help

UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - F1M9Z0 (F1M9Z0_RAT)

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RCG24561

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Nucleus

Nucleus

Keywords - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Keywords - Domaini

Phylogenomic databases

Family and domain databases

Experimental Info

Sequence databases

Genome annotation databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

PTM / Processingⁱ

Expressionⁱ

Interactionⁱ

Family & Domainsⁱ

Keywords - Domainⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ