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Protein
Submitted name:

Mucin-13

Gene

Muc13

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.PROSITE-ProRule annotation

Enzyme and pathway databases

ReactomeiR-RNO-913709 O-linked glycosylation of mucins
R-RNO-977068 Termination of O-glycan biosynthesis

Names & Taxonomyi

Protein namesi
Submitted name:
Mucin-13Imported
Gene namesi
Name:Muc13Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 11

Organism-specific databases

RGDi708547 Muc13

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei458 – 480HelicalSequence analysisAdd BLAST23

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PRIDEiF1M9I3

Expressioni

Gene expression databases

BgeeiENSRNOG00000001794 Expressed in 4 organ(s), highest expression level in colon
ExpressionAtlasiF1M9I3 baseline and differential

Structurei

3D structure databases

ProteinModelPortaliF1M9I3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini210 – 246EGF-likeInterPro annotationAdd BLAST37
Domaini250 – 366SEAInterPro annotationAdd BLAST117

Keywords - Domaini

EGF-like domainPROSITE-ProRule annotation, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IXVD Eukaryota
ENOG410XXX6 LUCA
GeneTreeiENSGT00710000106845
OMAiRCDYYGC
OrthoDBiEOG091G0GHV
TreeFamiTF335941

Family and domain databases

InterProiView protein in InterPro
IPR000742 EGF-like_dom
IPR000082 SEA_dom
PfamiView protein in Pfam
PF01390 SEA, 1 hit
SMARTiView protein in SMART
SM00181 EGF, 3 hits
SM00200 SEA, 1 hit
PROSITEiView protein in PROSITE
PS50026 EGF_3, 1 hit
PS50024 SEA, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

F1M9I3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
SLSSVTTKSD NKSGTIQTNG NSPQLAGTNQ FPGGTSSPTT APTKPTISSS
60 70 80 90 100
QTSTTAPPPG GASSPTTAPT KPTTSSSQTS TTAPPPGGAS SPTTAPTKPT
110 120 130 140 150
TSSSQTSTTA PPPGGASSPT TVPTKPTGSS SQTSTAAPPP GGASSPATAP
160 170 180 190 200
TKPTGSSSQT STTAPPPGGA SSPATAPTKP TGSSSQTSGA TQPPGGASSP
210 220 230 240 250
TVTSSSSTGS NDPCNSNPCK SPASCVKLYD SYFCLCLEGY YYNNSSSCVK
260 270 280 290 300
GTTFPGEIGM SVTETADLED KNSVNYQSLH SSVVNFFENT FKKTDYGQTV
310 320 330 340 350
ILKVSKDSLM SSRSVMRAAT KTVYVSVVNM FGESTTEDEK SVASVIEEAV
360 370 380 390 400
KTNSKVQSYS QQDRCDYYGC VKSGSNVCRN GLQCTCKPGL ERLNPQVPFC
410 420 430 440 450
VAPTCSEPCS AEKKQLCLKK DNGAMECGCM AGYRKANGKC EECPFGYSGM
460 470 480 490 500
DCKDQFQLIL TIVGTIAGAF ILILLIVFIV SMRSKNKKKS GEEQNLIEDD
510 520 530 540
FHNLRMRPTG FSNFGADTSI FPKVKTGVPS QTSNPYANHR SMPRPDY
Length:547
Mass (Da):56,620
Last modified:July 22, 2015 - v3
Checksum:i9B5DA6CAA6F27555
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
P97881MUC13_RAT
Mucin-13
Muc13
547Annotation score:
A0A096MIY5A0A096MIY5_RAT
Mucin-13
Muc13
537Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07034413 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSRNOT00000002444; ENSRNOP00000002444; ENSRNOG00000001794

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07034413 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliF1M9I3
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiF1M9I3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000002444; ENSRNOP00000002444; ENSRNOG00000001794

Organism-specific databases

RGDi708547 Muc13

Phylogenomic databases

eggNOGiENOG410IXVD Eukaryota
ENOG410XXX6 LUCA
GeneTreeiENSGT00710000106845
OMAiRCDYYGC
OrthoDBiEOG091G0GHV
TreeFamiTF335941

Enzyme and pathway databases

ReactomeiR-RNO-913709 O-linked glycosylation of mucins
R-RNO-977068 Termination of O-glycan biosynthesis

Gene expression databases

BgeeiENSRNOG00000001794 Expressed in 4 organ(s), highest expression level in colon
ExpressionAtlasiF1M9I3 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR000742 EGF-like_dom
IPR000082 SEA_dom
PfamiView protein in Pfam
PF01390 SEA, 1 hit
SMARTiView protein in SMART
SM00181 EGF, 3 hits
SM00200 SEA, 1 hit
PROSITEiView protein in PROSITE
PS50026 EGF_3, 1 hit
PS50024 SEA, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiF1M9I3_RAT
AccessioniPrimary (citable) accession number: F1M9I3
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 22, 2015
Last modified: November 7, 2018
This is version 48 of the entry and version 3 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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