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Protein
Submitted name:

Zic family member 5

Gene

Zic5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Zic family member 5Imported
Submitted name:
Zinc finger protein of the cerebellum 5 (Predicted)Imported
Gene namesi
Name:Zic5Imported
Synonyms:Zic5_predictedImported
ORF Names:rCG_36883Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 15

Organism-specific databases

RGDi1310160 Zic5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiF1M349

Expressioni

Gene expression databases

BgeeiENSRNOG00000014358 Expressed in 5 organ(s), highest expression level in brain

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000063030

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini65 – 92C2H2-typeInterPro annotationAdd BLAST28
Domaini93 – 122C2H2-typeInterPro annotationAdd BLAST30
Domaini123 – 152C2H2-typeInterPro annotationAdd BLAST30
Domaini153 – 182C2H2-typeInterPro annotationAdd BLAST30

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00900000140802
KOiK09226
OMAiDEDMYAN
OrthoDBiEOG091G0M59

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 3 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits

Sequencei

Sequence statusi: Complete.

F1M349-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRQPIKRELI CKWLDPEELA GPPAPADSGA KPCSKTFGTM HELVNHVTVE
60 70 80 90 100
HVGGPEQSSH VCFWEDCPRE GKPFKAKYKL INHIRVHTGE KPFPCPFPGC
110 120 130 140 150
GKVFARSENL KIHKRTHTGE KPFKCEFDGC DRKFANSSDR KKHSHVHTSD
160 170 180 190 200
KPYYCKIRGC DKSYTHPSSL RKHMKIHCKS PPPSPGALGY SSVGTPVGDT
210 220 230 240 250
LSPVLDPTRS RSSTLSPQVT NLNEWYVCQA GGAPSHLHTP SSNGTTSESE
260
DEEMYGNPEV MRTIH
Length:265
Mass (Da):29,483
Last modified:April 3, 2013 - v2
Checksum:i0F9C060BA1C8349C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC123185 Genomic DNA No translation available.
CH473951 Genomic DNA Translation: EDM02581.1
RefSeqiNP_001101861.1, NM_001108391.1
UniGeneiRn.198356

Genome annotation databases

EnsembliENSRNOT00000067577; ENSRNOP00000063030; ENSRNOG00000014358
GeneIDi361095
KEGGirno:361095

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC123185 Genomic DNA No translation available.
CH473951 Genomic DNA Translation: EDM02581.1
RefSeqiNP_001101861.1, NM_001108391.1
UniGeneiRn.198356

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000063030

Proteomic databases

PRIDEiF1M349

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000067577; ENSRNOP00000063030; ENSRNOG00000014358
GeneIDi361095
KEGGirno:361095

Organism-specific databases

CTDi85416
RGDi1310160 Zic5

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00900000140802
KOiK09226
OMAiDEDMYAN
OrthoDBiEOG091G0M59

Gene expression databases

BgeeiENSRNOG00000014358 Expressed in 5 organ(s), highest expression level in brain

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 3 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiF1M349_RAT
AccessioniPrimary (citable) accession number: F1M349
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: November 7, 2018
This is version 52 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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