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UniProtKB - F1M2B7 (F1M2B7_RAT)

Entry version 84 (19 Jan 2022)
Sequence version 3 (22 Jul 2015)
Previous versions | rss
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Protein
Submitted name:

GLI family zinc finger 2

Gene

Gli2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionActivatorARBA annotation, DNA-bindingARBA annotation
LigandMetal-binding, Zinc

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-RNO-5610787, Hedgehog 'off' state
R-RNO-5632684, Hedgehog 'on' state

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
GLI family zinc finger 2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Gli2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRattus norvegicus (Rat)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10116 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002494 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 13

Organism-specific databases

Rat genome database

More...RGDi		1309270, Gli2

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

NucleusARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		F1M2B7

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...Bgeei		ENSRNOG00000007261, Expressed in skeletal muscle tissue and 20 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		10116.ENSRNOP00000009963

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		F1M2B7

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini457 – 484C2H2-typeInterPro annotationAdd BLAST28
Domaini485 – 514C2H2-typeInterPro annotationAdd BLAST30
Domaini515 – 545C2H2-typeInterPro annotationAdd BLAST31
Domaini546 – 576C2H2-typeInterPro annotationAdd BLAST31

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 29DisorderedSequence analysisAdd BLAST29
Regioni559 – 621DisorderedSequence analysisAdd BLAST63
Regioni637 – 701DisorderedSequence analysisAdd BLAST65
Regioni807 – 863DisorderedSequence analysisAdd BLAST57
Regioni937 – 963DisorderedSequence analysisAdd BLAST27
Regioni1067 – 1088DisorderedSequence analysisAdd BLAST22
Regioni1172 – 1211DisorderedSequence analysisAdd BLAST40
Regioni1336 – 1357DisorderedSequence analysisAdd BLAST22
Regioni1372 – 1404DisorderedSequence analysisAdd BLAST33
Regioni1423 – 1457DisorderedSequence analysisAdd BLAST35

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi559 – 593Basic and acidic residuesSequence analysisAdd BLAST35
Compositional biasi637 – 665Polar residuesSequence analysisAdd BLAST29
Compositional biasi807 – 821Polar residuesSequence analysisAdd BLAST15
Compositional biasi835 – 863Polar residuesSequence analysisAdd BLAST29
Compositional biasi1388 – 1404Polar residuesSequence analysisAdd BLAST17
Compositional biasi1439 – 1457Polar residuesSequence analysisAdd BLAST19

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the GLI C2H2-type zinc-finger protein family.ARBA annotation

Keywords - Domaini

RepeatARBA annotation, Zinc-fingerPROSITE-ProRule annotationARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		KOG1721, Eukaryota

Ensembl GeneTree

More...GeneTreei		ENSGT00940000155925

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_003666_2_0_1

Identification of Orthologs from Complete Genome Data

More...OMAi		GAQDHSM

Database of Orthologous Groups

More...OrthoDBi		56870at2759

TreeFam database of animal gene trees

More...TreeFami		TF350216

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR043359, GLI-like
IPR036236, Znf_C2H2_sf
IPR013087, Znf_C2H2_type

The PANTHER Classification System

More...PANTHERi		PTHR45718, PTHR45718, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00096, zf-C2H2, 4 hits

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00355, ZnF_C2H2, 5 hits

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF57667, SSF57667, 3 hits

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS00028, ZINC_FINGER_C2H2_1, 4 hits
PS50157, ZINC_FINGER_C2H2_2, 4 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

F1M2B7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
METSAQAPAL EKKEAKSGLL EDSSFPDPGK KACPLAVAAP AAAVAAQGVP 
        60         70         80         90        100
QQLLPSFHVP LPIDMRHQEG RYHYDPHPVH GVHGPPTLSG SPVISDISLI 
       110        120        130        140        150
RLSPHPAGPG ESPFSAHHPY MNPHMEHYLR SVHSSPTLSM ISAARGLSPA 
       160        170        180        190        200
DVAHEHLKER GLFSLAAPGT NPSDYYHQMT LMASHPTPYG DILMQSGGAA 
       210        220        230        240        250
SAPHLHDYLN PVDASRFSSP RVTPRLSRKR ALSISPLSDA SLDLQRMIRT 
       260        270        280        290        300
SPNSLVAYIN NSRSSSAASG SYGHLSAGAL SPAFTFPHPI NPVAYQQILS 
       310        320        330        340        350
QQRGLGSAFG HTPPLIQPSP TFLAQQPMTL TSITVPTQLG SNSSNCISDA 
       360        370        380        390        400
NQNKQNSESA VSSTVNPITI HKRSKVKTEA EGLRPASPLG LTQEQLADLK 
       410        420        430        440        450
EDLDRDDCKQ EAEVVIYETN CHWADCTKEY DTQEQLVHHI NNEHIHGEKK 
       460        470        480        490        500
EFVCRWQACT REQKPFKAQY MLVVHMRRHT GEKPHKCTFE GCSKAYSRLE 
       510        520        530        540        550
NLKTHLRSHT GEKPYVCEHE GCNKAFSNAS DRAKHQNRTH SNEKPYICKI 
       560        570        580        590        600
PGCTKRYTDP SSLRKHVKTV HGPDAHVTKK QRNDVHLRAP LLKENGDNEA 
       610        620        630        640        650
GAEPGGRGPE ESVEASSTSH TAEDCLHIKA IKTESSGLCQ SSPGAQSSCS 
       660        670        680        690        700
SEPSPLGSVP NNDSGVEMPG TGPGSLGDLT ALDDTSPGAD TSALAVPSTG 
       710        720        730        740        750
GLQLRKHMTT MHRFEQLKRE KLKSLKDSCS WAGPAPHTRN TKLPPLPVNG 
       760        770        780        790        800
SVLENFNNTG GCGPAGLLPN QRLPELTEVT MLSQLQERRD SSTSTMSSAY 
       810        820        830        840        850
TVSRRSSGIS PYFSSRRSSE ASPLGGIRPH NASSADSYDP ISTDASRRSS 
       860        870        880        890        900
EASQCSGGGP GLLNLTPAQQ YSLRAKYAAA TGGPPPTPLP GLDRVSLRTR 
       910        920        930        940        950
LALLDAPERA LPGACPQPLG PRRGSDGPTY NHGHGYVGAA PALPHEGPNG 
       960        970        980        990       1000
STRRASDPVR RPDPLVLPRV QRFHSIHNMN PGPLPPCTDR RGLHLQSHPS 
      1010       1020       1030       1040       1050
VDGSLTRHAY SPRPPSINEN VVMEAVAAGV EGAGLESDLG LVEDDLVLPD 
      1060       1070       1080       1090       1100
DVVQYIKAHT GGALDDSTRQ VYPTEGTGFP ENSKLPSPGL QGHRRLAAAD 
      1110       1120       1130       1140       1150
SNMSPSAPGL GGCQLSYSPS SSLNKSNMPV QWNEVSSGTV DALPTQVKPP 
      1160       1170       1180       1190       1200
SFPQSNLVQQ KPAFAHYPGY SPQALQSGSG GLDSTQPHLQ LRGAPSASRG 
      1210       1220       1230       1240       1250
SYTQQPRLPA TGSQCLGVTA AMSPQANYSQ THHQLSPNVV SGSLNQFAPS 
      1260       1270       1280       1290       1300
CSNMAAKPSH LGLPQQMEVV PNATIISGHQ RELGIASSSL AAVSQPHPVL 
      1310       1320       1330       1340       1350
GYPQQDGYQQ VSGLPSSHQP SFMESQQNTG FGLMQPRPPL EPNTASRHRG 
      1360       1370       1380       1390       1400
VRSGQQQQQL YARTAGQAVV TSANQETAEA MPKGTAGTVV SLTPQPSQDT 
      1410       1420       1430       1440       1450
GRSQDQNTLY YYGQIHMYEQ NGGCPAMQPQ PPQPQGCSDN IQPEPLPSPG 
      1460       1470       1480       1490       1500
VNQVSSTVDS QLLEPPQIDF DAIMDDGDHS SLFSGALSPS LLHNLSQNSS 
      1510       1520       1530       1540 
RLTTPRNSLT LPSIPVGISN MAVGDMSSML TSLAEENKFL NMMT
Length:1,544
Mass (Da):165,094
Last modified:July 22, 2015 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEBAC817D74AD0FCA
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AABR07020674 Genomic DNA No translation available.
AABR07020675 Genomic DNA No translation available.
AABR07020676 Genomic DNA No translation available.
AABR07020677 Genomic DNA No translation available.

NCBI Reference Sequences

More...RefSeqi		XP_008767677.1, XM_008769455.2
XP_017454273.1, XM_017598784.1

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...Ensembli		ENSRNOT00000009963; ENSRNOP00000009963; ENSRNOG00000007261

Database of genes from NCBI RefSeq genomes

More...GeneIDi		304729

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07020674 Genomic DNA No translation available.
AABR07020675 Genomic DNA No translation available.
AABR07020676 Genomic DNA No translation available.
AABR07020677 Genomic DNA No translation available.
RefSeqiXP_008767677.1, XM_008769455.2
XP_017454273.1, XM_017598784.1

3D structure databases

SMRiF1M2B7
ModBaseiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000009963

Proteomic databases

PaxDbiF1M2B7

Genome annotation databases

EnsembliENSRNOT00000009963; ENSRNOP00000009963; ENSRNOG00000007261
GeneIDi304729

Organism-specific databases

Comparative Toxicogenomics Database

More...CTDi		2736
RGDi1309270, Gli2

Phylogenomic databases

eggNOGiKOG1721, Eukaryota
GeneTreeiENSGT00940000155925
HOGENOMiCLU_003666_2_0_1
OMAiGAQDHSM
OrthoDBi56870at2759
TreeFamiTF350216

Enzyme and pathway databases

ReactomeiR-RNO-5610787, Hedgehog 'off' state
R-RNO-5632684, Hedgehog 'on' state

Gene expression databases

BgeeiENSRNOG00000007261, Expressed in skeletal muscle tissue and 20 other tissues

Family and domain databases

InterProiView protein in InterPro
IPR043359, GLI-like
IPR036236, Znf_C2H2_sf
IPR013087, Znf_C2H2_type
PANTHERiPTHR45718, PTHR45718, 1 hit
PfamiView protein in Pfam
PF00096, zf-C2H2, 4 hits
SMARTiView protein in SMART
SM00355, ZnF_C2H2, 5 hits
SUPFAMiSSF57667, SSF57667, 3 hits
PROSITEiView protein in PROSITE
PS00028, ZINC_FINGER_C2H2_1, 4 hits
PS50157, ZINC_FINGER_C2H2_2, 4 hits

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF1M2B7_RAT
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F1M2B7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: July 22, 2015
Last modified: January 19, 2022
This is version 84 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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