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Protein
Submitted name:

Achaete-scute family bHLH transcription factor 5

Gene

Ascl5

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Achaete-scute family bHLH transcription factor 5Imported
Submitted name:
RCG45930Imported
Gene namesi
Name:Ascl5Imported
ORF Names:rCG_45930Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 13

Organism-specific databases

RGDi1561854 Ascl5

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiF1LUI6

Expressioni

Gene expression databases

BgeeiENSRNOG00000033391 Expressed in 1 organ(s), highest expression level in brain

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000048485

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini80 – 132BHLHInterPro annotationAdd BLAST53

Phylogenomic databases

eggNOGiKOG4029 Eukaryota
ENOG411227D LUCA
GeneTreeiENSGT00530000063321
KOiK09067
OMAiVPFPGAF
OrthoDBiEOG091G0RR2
TreeFamiTF322889

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR015660 MASH1/Ascl1a-like
PANTHERiPTHR13935 PTHR13935, 1 hit
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit

Sequencei

Sequence statusi: Complete.

F1LUI6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNSNFCRALV DRGSPGGIQL GVVAPAGPTP LAATEPLGNV PFLLYPGHSE
60 70 80 90 100
PSYYDAYTGV FPYVPFPGAF GVYDYPFEPA FIQKRNERER QRVKCVNEGY
110 120 130 140 150
ARLRGHLPGA LAEKRLSKVE TLRAAIRYIK YLQELLSAAP DGAPPTATSP
160 170 180
PPAHAGHGNA LQPPSLVAES SGSSFSPSPF LESEEPSL
Length:188
Mass (Da):20,154
Last modified:April 3, 2013 - v2
Checksum:i19E07C8E1DE320CA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07021000 Genomic DNA No translation available.
CH473958 Genomic DNA Translation: EDM09670.1
RefSeqiXP_017454536.1, XM_017599047.1
XP_017460187.1, XM_017604698.1

Genome annotation databases

EnsembliENSRNOT00000048033; ENSRNOP00000048485; ENSRNOG00000033391
GeneIDi363991
KEGGirno:363991

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07021000 Genomic DNA No translation available.
CH473958 Genomic DNA Translation: EDM09670.1
RefSeqiXP_017454536.1, XM_017599047.1
XP_017460187.1, XM_017604698.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000048485

Proteomic databases

PRIDEiF1LUI6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000048033; ENSRNOP00000048485; ENSRNOG00000033391
GeneIDi363991
KEGGirno:363991

Organism-specific databases

CTDi647219
RGDi1561854 Ascl5

Phylogenomic databases

eggNOGiKOG4029 Eukaryota
ENOG411227D LUCA
GeneTreeiENSGT00530000063321
KOiK09067
OMAiVPFPGAF
OrthoDBiEOG091G0RR2
TreeFamiTF322889

Gene expression databases

BgeeiENSRNOG00000033391 Expressed in 1 organ(s), highest expression level in brain

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR015660 MASH1/Ascl1a-like
PANTHERiPTHR13935 PTHR13935, 1 hit
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiF1LUI6_RAT
AccessioniPrimary (citable) accession number: F1LUI6
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: April 3, 2013
Last modified: November 7, 2018
This is version 55 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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