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Protein
Submitted name:

Rabphilin-3A

Gene

Rph3a

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri88 – 145FYVE-typePROSITE-ProRule annotationAdd BLAST58

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Rabphilin-3AImported
Gene namesi
Name:Rph3aImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 12

Organism-specific databases

RGDi620073 Rph3a

Subcellular locationi

PTM / Processingi

Proteomic databases

PRIDEiF1LPB9

Expressioni

Gene expression databases

BgeeiENSRNOG00000001368 Expressed in 4 organ(s), highest expression level in brain

Interactioni

GO - Molecular functioni

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini40 – 157RabBDInterPro annotationAdd BLAST118
Domaini88 – 145FYVE-typeInterPro annotationAdd BLAST58
Domaini397 – 488C2InterPro annotationAdd BLAST92
Domaini557 – 645C2InterPro annotationAdd BLAST89

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri88 – 145FYVE-typePROSITE-ProRule annotationAdd BLAST58

Keywords - Domaini

RepeatSAAS annotation, Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1013 Eukaryota
ENOG410XQXA LUCA
GeneTreeiENSGT00810000125376
OMAiSKGDRLQ
OrthoDBiEOG091G0FPP
TreeFamiTF351844

Family and domain databases

Gene3Di2.60.40.150, 2 hits
3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR000008 C2_dom
IPR035892 C2_domain_sf
IPR010911 Rab_BD
IPR028698 RPH3A
IPR001565 Synaptotagmin
IPR017455 Znf_FYVE-rel
IPR011011 Znf_FYVE_PHD
IPR013083 Znf_RING/FYVE/PHD
PANTHERiPTHR10024:SF118 PTHR10024:SF118, 1 hit
PfamiView protein in Pfam
PF00168 C2, 2 hits
PRINTSiPR00360 C2DOMAIN
PR00399 SYNAPTOTAGMN
SMARTiView protein in SMART
SM00239 C2, 2 hits
SUPFAMiSSF57903 SSF57903, 1 hit
PROSITEiView protein in PROSITE
PS50004 C2, 2 hits
PS50916 RABBD, 1 hit
PS50178 ZF_FYVE, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

F1LPB9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTDTVVNRWM YPGDGPLQSN DKEQLQAGWS VHPGAQTDRQ RKQEELTDEE
60 70 80 90 100
KEIINRVIAR AEKMEAMEQE RIGRLVDRLE TMRKNVAGDG VNRCILCGEQ
110 120 130 140 150
LGMLGSACVV CEDCKKNVCT KCGVETSNNR PHPVWLCKIC LEQREVWKRS
160 170 180 190 200
GAWFFKGFPK QVLPQPMPIK KTKPQQPAGE PATQEQPTPE SRHPARAPAR
210 220 230 240 250
GDMEDRRAPG QKPGPDLTSA PGRGSHGPPT RRASEARMST TTRDSEGWDH
260 270 280 290 300
GHGGGAGDTS RSPGGEQGLR RANSVQASRP APASMPSPAP PQPVQPGPPG
310 320 330 340 350
GSRAAPGPGR FPEQSTEAPP SDPGYPGAVA PAREERTGPT GGFQAAPHTA
360 370 380 390 400
GPYSQAAPAR QPPPAEEEEE EANSYDSDEA TTLGALEFSL LYDQDNSNLQ
410 420 430 440 450
CTIIRAKGLK PMDSNGLADP YVKLHLLPGA SKSNKLRTKT LRNTRNPVWN
460 470 480 490 500
ETLQYHGITE EDMQRKTLRI SVCDEDKFGH NEFIGETRFS LKKLKANQRK
510 520 530 540 550
NFNICLERVI PMKRAGTTGS ARGMALYEEE QVERIGDIEE RGKILVSLMY
560 570 580 590 600
STQQGGLIVG IIRCVHLAAM DANGYSDPFV KLWLKPDMGK KAKHKTQIKK
610 620 630 640 650
KTLNPEFNEE FFYDIKHSDL AKKSLDISVW DYDIGKSNDY IGGCQLGISA
660 670 680
KGERLKHWYE CLKNKDKKIE RWHQLQNENH VSSD
Length:684
Mass (Da):75,803
Last modified:May 3, 2011 - v1
Checksum:i58E6F912A0CBC69F
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
P47709RP3A_RAT
Rabphilin-3A
Rph3a
684Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC098508 Genomic DNA No translation available.
RefSeqiXP_006249441.1, XM_006249379.3
UniGeneiRn.10976

Genome annotation databases

EnsembliENSRNOT00000001844; ENSRNOP00000001844; ENSRNOG00000001368
GeneIDi171039

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC098508 Genomic DNA No translation available.
RefSeqiXP_006249441.1, XM_006249379.3
UniGeneiRn.10976

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiF1LPB9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000001844; ENSRNOP00000001844; ENSRNOG00000001368
GeneIDi171039

Organism-specific databases

CTDi22895
RGDi620073 Rph3a

Phylogenomic databases

eggNOGiKOG1013 Eukaryota
ENOG410XQXA LUCA
GeneTreeiENSGT00810000125376
OMAiSKGDRLQ
OrthoDBiEOG091G0FPP
TreeFamiTF351844

Gene expression databases

BgeeiENSRNOG00000001368 Expressed in 4 organ(s), highest expression level in brain

Family and domain databases

Gene3Di2.60.40.150, 2 hits
3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR000008 C2_dom
IPR035892 C2_domain_sf
IPR010911 Rab_BD
IPR028698 RPH3A
IPR001565 Synaptotagmin
IPR017455 Znf_FYVE-rel
IPR011011 Znf_FYVE_PHD
IPR013083 Znf_RING/FYVE/PHD
PANTHERiPTHR10024:SF118 PTHR10024:SF118, 1 hit
PfamiView protein in Pfam
PF00168 C2, 2 hits
PRINTSiPR00360 C2DOMAIN
PR00399 SYNAPTOTAGMN
SMARTiView protein in SMART
SM00239 C2, 2 hits
SUPFAMiSSF57903 SSF57903, 1 hit
PROSITEiView protein in PROSITE
PS50004 C2, 2 hits
PS50916 RABBD, 1 hit
PS50178 ZF_FYVE, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiF1LPB9_RAT
AccessioniPrimary (citable) accession number: F1LPB9
Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: November 7, 2018
This is version 58 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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