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Entry version 36 (10 Apr 2019)
Sequence version 1 (03 May 2011)
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Protein
Submitted name:

Rnase3 domain containing protein

Gene

CMQ_2947

Organism
Grosmannia clavigera (strain kw1407 / UAMH 11150) (Blue stain fungus) (Graphiocladiella clavigera)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Rnase3 domain containing proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:CMQ_2947Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiGrosmannia clavigera (strain kw1407 / UAMH 11150) (Blue stain fungus) (Graphiocladiella clavigera)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri655863 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaSordariomycetesSordariomycetidaeOphiostomatalesOphiostomataceaeGrosmannia
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007796 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
226899.F0XHZ0

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini131 – 313Helicase ATP-bindingInterPro annotationAdd BLAST183
Domaini757 – 892RNase IIIInterPro annotationAdd BLAST136
Domaini943 – 1106RNase IIIInterPro annotationAdd BLAST164

Phylogenomic databases

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
F0XHZ0

Database of Orthologous Groups

More...
OrthoDBi
1337630at2759

Family and domain databases

Conserved Domains Database

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CDDi
cd00593 RIBOc, 2 hits

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
1.10.1520.10, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR006935 Helicase/UvrB_N
IPR014001 Helicase_ATP-bd
IPR027417 P-loop_NTPase
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04851 ResIII, 1 hit
PF00636 Ribonuclease_3, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00535 RIBOc, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 1 hit
SSF69065 SSF69065, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

F0XHZ0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEPDMSMLSS EPPVGESMRL LSSLVLDNTN DEAARDEPLR EDVYDDHLED
60 70 80 90 100
SDEDGMPLEN TGSSNNLNLS QKHRSDKDAF ESWLAQNRVS ITDSRADETV
110 120 130 140 150
LRDEDKTTAS LVREFEASKI IESPRDYQVE LFEKAKQKNV IAVLDTGSGK
160 170 180 190 200
TLIAALLLRH MIDKELEDRS QGKPARLSFF LVDKVALVFQ QHAVLECNLS
210 220 230 240 250
HSVAKFSGDK VDLRWTSKSF WDDVLRDNMA IVCTADILLK CLHHSYVCME
260 270 280 290 300
QINLLIFDEA HHTKKNHAYA RIIKDFYAHE CPSNRPKIFG MTASPVDART
310 320 330 340 350
NIAQAAEELE ALLHSEIATV SNDLLLHSVA KPKKEWVLHY HVSLRPPLTE
360 370 380 390 400
LTEKLGRLVG DHRLFAKNFH FARDGLIYLG PWLVDRFWQL IFRAEELAKQ
410 420 430 440 450
EAKAEIDSLP YSTALGRLSG AREIDTSEPA LPKGLGQESA TNSTIVAAVR
460 470 480 490 500
EASRLVQEYA FIMPSKQMLS NKVRRLHETL SDEYSKLDGR KTRCIVFVDQ
510 520 530 540 550
SLAAYTLKLF DDVFSKWYKG TAADFPYLIA PCSVTRHGFI LDEKAPTRSI
560 570 580 590 600
LDWAGINAVS QATDNPYTGN EPDAFFTNKF VSDPFDGSRK FYMRHVRRDL
610 620 630 640 650
KPLDPVPEGV PHPKHRMWNR NGTKHDILNY SVSLWSKARS KMSIKENQPV
660 670 680 690 700
VEAEIITNRR NLLDDRVHLD NPEQKICFLV LETLKISPLP AEIVAMAFNI
710 720 730 740 750
PVIIHRIEST LIALEATSVI GIPRIRPELA LEAVTKDCDN PDAQDETPLN
760 770 780 790 800
FQAGMGRNYE RLELLGDSFL KLATSIALFT LVPDKDEFEY HVQRMCMICN
810 820 830 840 850
RNLFNNALDM KLEEYIRSRE FDRTWYPPTI EEAGKSTDND NYSDNTPAPP
860 870 880 890 900
SQNGLVLQKG KRTQLPTHHP LGDKTIADVC EAMIGAAYLT TYEERNFDLA
910 920 930 940 950
VQAVSAVVKS KLHPMQSYAE YYTAYKPPGW QLCPSTAAQL HMAVSIAKDL
960 970 980 990 1000
GYQFRFPRLL RSAFTHPSYP RIYENLPSYQ RLEFLGDALL DMAIVDYLFH
1010 1020 1030 1040 1050
KFSNKDPQWL TEHKMAMVSN QFLAFLSVSL GFHRHILSFS GEMRKQILEY
1060 1070 1080 1090 1100
VTKVEEERVR AESEAVEAGR PASEFARDYW VHVTHPPKAL ADVLEAYVGA
1110 1120 1130 1140 1150
LFVDSEYDYH GTVLKFFNTH VQPYFKDMSL YDTFANKHPV TFAVKMLSQR
1160 1170 1180 1190 1200
FGCRDWRVIV QEIPDTEGEG CVTFATKVAA GFLVHGQVVG HGIAESGRYA
1210 1220 1230 1240
KIGAAKKALA KFSTLSISAF QTLTGCQCSS EPEAVIETDE ELSTAI
Length:1,246
Mass (Da):141,021
Last modified:May 3, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7561154836A2A722
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
GL629769 Genomic DNA Translation: EFX03018.1

NCBI Reference Sequences

More...
RefSeqi
XP_014172500.1, XM_014317025.1

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
EFX03018; EFX03018; CMQ_2947

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
25975992

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL629769 Genomic DNA Translation: EFX03018.1
RefSeqiXP_014172500.1, XM_014317025.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protein-protein interaction databases

STRINGi226899.F0XHZ0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiEFX03018; EFX03018; CMQ_2947
GeneIDi25975992

Phylogenomic databases

InParanoidiF0XHZ0
OrthoDBi1337630at2759

Family and domain databases

CDDicd00593 RIBOc, 2 hits
Gene3Di1.10.1520.10, 1 hit
InterProiView protein in InterPro
IPR006935 Helicase/UvrB_N
IPR014001 Helicase_ATP-bd
IPR027417 P-loop_NTPase
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf
PfamiView protein in Pfam
PF04851 ResIII, 1 hit
PF00636 Ribonuclease_3, 2 hits
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00535 RIBOc, 2 hits
SUPFAMiSSF52540 SSF52540, 1 hit
SSF69065 SSF69065, 2 hits
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 2 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiF0XHZ0_GROCL
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: F0XHZ0
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 3, 2011
Last sequence update: May 3, 2011
Last modified: April 10, 2019
This is version 36 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
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