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Protein
Submitted name:

AT-rich interactive domain-containing protein 4A

Gene

Arid4a

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-MMU-3214815 HDACs deacetylate histones

Names & Taxonomyi

Protein namesi
Submitted name:
AT-rich interactive domain-containing protein 4AImported
Gene namesi
Name:Arid4aImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 12

Organism-specific databases

MGIiMGI:2444354 Arid4a

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

MaxQBiE9Q9V1
PeptideAtlasiE9Q9V1
PRIDEiE9Q9V1

Expressioni

Gene expression databases

BgeeiENSMUSG00000048118 Expressed in 235 organ(s), highest expression level in pineal body
ExpressionAtlasiE9Q9V1 baseline and differential

Structurei

3D structure databases

SMRiE9Q9V1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 79ARIDInterPro annotationAdd BLAST79

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili323 – 343Sequence analysisAdd BLAST21

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2744 Eukaryota
KOG3001 Eukaryota
ENOG410Y2AP LUCA
GeneTreeiENSGT00900000140901
OMAiDQCAKEK

Family and domain databases

CDDicd00024 CHROMO, 1 hit
Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR016197 Chromo-like_dom_sf
IPR000953 Chromo/chromo_shadow_dom
IPR025995 Tudor-knot
PfamiView protein in Pfam
PF01388 ARID, 1 hit
PF11717 Tudor-knot, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SM00298 CHROMO, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
SSF54160 SSF54160, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit

Sequence (1+)i

Sequence statusi: Fragment.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

E9Q9V1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEDRGTPINK PPVLGYKDLN LFKLFRLVYH QGGCGNIDSG AVWKQIYMDL
60 70 80 90 100
GIPILNSAAS YNVKTAYRKY LYGFEEYCRS ANIQFRTIHH HEPKVKEEKK
110 120 130 140 150
DFEDSMDEAL KEAPEMPLLD VKSEPEENTD SNSESDREDT ELKSPRGRRK
160 170 180 190 200
IVRDANCIKK EIEEEKIEDK FLRDDLENKD AGDDDDDGDP AAKREHELLF
210 220 230 240 250
GRKSTPKNKE KKIKKPEDSE RDSDEEEEKS QEREETESRC DSEGEDEEDD
260 270 280 290 300
TEPCLTGTKV KVKYGRGKTQ KIYEASIKST EMDDGEILYL VHYYGWNVRY
310 320 330 340 350
DEWVKADRII WPLDKGGPKK KQKKKVKNKE DSEKDEKRDE ERQKSKRGRP
360 370 380 390 400
PLKSTFSPNM PYSLSKTSNS EGKSDSCSSD SEADDQLEKS SGGEDLSPDV
410 420 430 440 450
KEELEKNENA HDDKLDEENP KIVHISKEND RTQAQPSDTL TVEAGDSDQI
460 470 480 490 500
VHIFGDKVDQ VEEFKKQVEK SPKGKGRRSK TKDLSLELIK ISPFGQEEAG
510 520 530
SEAHGDVHSL EFSSLECKNF SSTEDDIDPY E
Length:531
Mass (Da):60,865
Last modified:April 5, 2011 - v1
Checksum:iD919ECCBD3F5CC27
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F8VPQ2ARI4A_MOUSE
AT-rich interactive domain-containi...
Arid4a Rbbp1, Rbp1
1,261Annotation score:
Q8BY40Q8BY40_MOUSE
AT-rich interactive domain-containi...
Arid4a
295Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei531Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112794 Genomic DNA No translation available.
AC132325 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSMUST00000135709; ENSMUSP00000121319; ENSMUSG00000048118

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112794 Genomic DNA No translation available.
AC132325 Genomic DNA No translation available.

3D structure databases

SMRiE9Q9V1
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

MaxQBiE9Q9V1
PeptideAtlasiE9Q9V1
PRIDEiE9Q9V1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000135709; ENSMUSP00000121319; ENSMUSG00000048118

Organism-specific databases

MGIiMGI:2444354 Arid4a

Phylogenomic databases

eggNOGiKOG2744 Eukaryota
KOG3001 Eukaryota
ENOG410Y2AP LUCA
GeneTreeiENSGT00900000140901
OMAiDQCAKEK

Enzyme and pathway databases

ReactomeiR-MMU-3214815 HDACs deacetylate histones

Miscellaneous databases

ChiTaRSiArid4a mouse
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000048118 Expressed in 235 organ(s), highest expression level in pineal body
ExpressionAtlasiE9Q9V1 baseline and differential

Family and domain databases

CDDicd00024 CHROMO, 1 hit
Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR016197 Chromo-like_dom_sf
IPR000953 Chromo/chromo_shadow_dom
IPR025995 Tudor-knot
PfamiView protein in Pfam
PF01388 ARID, 1 hit
PF11717 Tudor-knot, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SM00298 CHROMO, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
SSF54160 SSF54160, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiE9Q9V1_MOUSE
AccessioniPrimary (citable) accession number: E9Q9V1
Entry historyiIntegrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: November 7, 2018
This is version 63 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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