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UniProtKB - E8XIV6 (E8XIV6_SALT4)

Entry version 35 (12 Aug 2020)
Sequence version 1 (05 Apr 2011)
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Protein
Submitted name:

Rhs1 protein

Gene

rhs1

Organism
Salmonella typhimurium (strain 4/74)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Rhs1 proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rhs1Imported
Ordered Locus Names:STM474_0303Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSalmonella typhimurium (strain 4/74)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri909946 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Salmonella ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008978 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei20 – 53HelicalSequence analysisAdd BLAST34

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RHS family.ARBA annotation

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_001218_1_4_6

Identification of Orthologs from Complete Genome Data

More...OMAi		VECENAY

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR008727, PAAR_motif
IPR001826, RHS
IPR022385, Rhs_assc_core
IPR031325, RHS_repeat
IPR006530, YD

Pfam protein domain database

More...Pfami		View protein in Pfam
PF05488, PAAR_motif, 1 hit
PF03527, RHS, 1 hit
PF05593, RHS_repeat, 2 hits

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR00394, RHSPROTEIN

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR03696, Rhs_assc_core, 1 hit
TIGR01643, YD_repeat_2x, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

E8XIV6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTMYEAARVD DPIYHTSALA GFLIGAIIGI AIIALAAFAF FSCGFLAGLI 
        60         70         80         90        100
LGFMADQIAS GVLQLGEAIG RSIHHTAGKI LTGSENVSTN SRPAARAVLS 
       110        120        130        140        150
TVKCDNHIAE KRIAQGSENI YINSQPAARK DDHTECDAVI EDGSPNVFLG 
       160        170        180        190        200
GGTQTVLEIS SEIPDWLRKV VDVLFVVASL LGGLAGAWRQ AAKLGTKFGT 
       210        220        230        240        250
KCAAKFIGGE LVGMAVGEAI SGLFSNPVDV TTGQKILLPE TDFTLPGRLP 
       260        270        280        290        300
VTCSRFYASH LETVGLLGRG WRLNWETSLR DDDEHITLTG VQGRELRYPK 
       310        320        330        340        350
TMLTPGHQIF DPEEQLYLSR LHDGRYVLHY TDRSYYVFGD FDSDGMAYLL 
       360        370        380        390        400
FMETPHRQRI VFGHEGGRLV RIASSSGHHL LLHRTQTPAG ERLSRIELVQ 
       410        420        430        440        450
GGTRGNLVEY RYDDNGQLTG VVNRAGTQVR QFAYENGLMT AHSNATGFTC 
       460        470        480        490        500
RYRWQELDGA PRVTEHDTSD GEHYRFDYDF AAGTTTVTGR QGETWQWWYD 
       510        520        530        540        550
RETYITAHRT PGGGMYRFTY NEDHFPVNIE LPGGRTVAYE YDIQNRVVKT 
       560        570        580        590        600
TDPEGRVTQT QWNGEFDEIT RTALDDDAVW KTQYNAHGQP VQETDPEGRV 
       610        620        630        640        650
TQYAYDEQGQ MCSRTDAAGG TQGGVRRETQ QRDALGRLLR TENEHGQRTF 
       660        670        680        690        700
SYNRLDQITA VTLTPTEAGQ QQHRMQADTV RFEYDRSGWL TAEHAGNGSI 
       710        720        730        740        750
CYQRDALGNP TDITLPDGQH LTHLYYGSGH LLQTALDGLT VSEYERDSLH 
       760        770        780        790        800
RQIMRTQGQL ATYSGYDDDG LLSWQRSLAS GSAPVLPGQR PARQGCVTSR 
       810        820        830        840        850
DYYWNNHGEV GTIDDGLRGS VVYSYDRSGY LTGRSGQMYD HDRYYYDKAG 
       860        870        880        890        900
NLLDNEGQGA VMSNRLPGCG RDRYGYNEWG ELTTRRDQQL EWNAQGQLTR 
       910        920        930        940        950
VISGNTETHY GYDALGRRTR KATYGRHTGH TARSRTDFVW EGFRLLQENV 
       960        970        980        990       1000
QQQGWRTYLY DAEQPYTPVA SVTGRGESRQ VWYYHTDVTG TPQEVTAADG 
      1010       1020       1030       1040       1050
TLVWAGYIRG FGENAADISN SGAYFHQPLR LPGQYFDDET GLHYNLFRYY 
      1060       1070       1080       1090       1100
APECGRFVSQ DPIGLRGGLN LYQYAPNPLK YIDPLGLTAT VGRWMGPAEY 
      1110       1120       1130       1140       1150
QQMLDTGTVV QSSTGTTHVA YPADIDAFGK QAKNGAMYVE FDVPEKSLVP 
      1160       1170       1180       1190       1200
TNEGWAKIVG PDSIEGRLAK RKGLPVPEMP TAENITVRGE KINGEVEAKC
Length:1,200
Mass (Da):133,638
Last modified:April 5, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i6920687444D78922
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP002487 Genomic DNA Translation: ADX16036.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ADX16036; ADX16036; STM474_0303

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		seb:STM474_0303

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|909946.3.peg.307

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002487 Genomic DNA Translation: ADX16036.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiADX16036; ADX16036; STM474_0303
KEGGiseb:STM474_0303
PATRICifig|909946.3.peg.307

Phylogenomic databases

HOGENOMiCLU_001218_1_4_6
OMAiVECENAY

Family and domain databases

InterProiView protein in InterPro
IPR008727, PAAR_motif
IPR001826, RHS
IPR022385, Rhs_assc_core
IPR031325, RHS_repeat
IPR006530, YD
PfamiView protein in Pfam
PF05488, PAAR_motif, 1 hit
PF03527, RHS, 1 hit
PF05593, RHS_repeat, 2 hits
PRINTSiPR00394, RHSPROTEIN
TIGRFAMsiTIGR03696, Rhs_assc_core, 1 hit
TIGR01643, YD_repeat_2x, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiE8XIV6_SALT4
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: E8XIV6
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: April 5, 2011
Last sequence update: April 5, 2011
Last modified: August 12, 2020
This is version 35 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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