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Entry version 54 (07 Oct 2020)
Sequence version 2 (20 Jun 2018)
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Protein
Submitted name:

Zmp:0000000606

Gene

zmp:0000000606

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Zmp:0000000606Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:zmp:0000000606Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri7955 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesDanionidaeDanioninaeDanio
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000437 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 22

Organism-specific databases

Zebrafish Information Network genome database

More...
ZFINi
ZDB-GENE-130530-609, zmp:0000000606

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

CytoplasmARBA annotation, NucleusARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
E7FEG3

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSDARG00000040921, Expressed in intestine and 8 other tissues

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini639 – 882VLIG-type GInterPro annotationAdd BLAST244

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili985 – 1005Sequence analysisAdd BLAST21

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the TRAFAC class dynamin-like GTPase superfamily. Very large inducible GTPase (VLIG) family.ARBA annotation

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG502QVVR, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000163472

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_002276_3_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
E7FEG3

Database of Orthologous Groups

More...
OrthoDBi
418635at2759

TreeFam database of animal gene trees

More...
TreeFami
TF335271

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR030383, G_VLIG_dom
IPR027417, P-loop_NTPase

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540, SSF52540, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51717, G_VLIG, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

E7FEG3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MHCIVSQLNV DKHLEDDAIT SIEEKKHLFQ RLHLDIRHNF KLKAAKVLLQ
60 70 80 90 100
NTYSLQSHES CSEKDLIQTF LQKLLMMNYR SRYIKTENTI EQHDRPQRNN
110 120 130 140 150
DLLEDEANVD IFTEMPLFTE EKSQRDPVHP MDIQMAVFYC ADSFLKQLMV
160 170 180 190 200
TKLSQCQYAL PLLVPDPFTR EIEFPLWAFR QISKSWKIKH AAGETSSETQ
210 220 230 240 250
PVWKAETPMV FFFRFGPVSS SKSQLMNNLI NEKHNTFFHR NCSGSSETRL
260 270 280 290 300
LMDGVVEIAW YCPSGKDTDK FTQCVAFCNI HGDAGDHEKQ MQILTKLSSV
310 320 330 340 350
NIVILPRLDE NDRSATLIQN LYKDKTPLVC LFAEEKHKVT ETRKTKYKIG
360 370 380 390 400
LKDRNQSDVS EELIKTINKC LSLSSPESSS VFRLENVSKD SGIRVDEEHD
410 420 430 440 450
GDCRRGKKAA QQMMDLLKGN NLTEIKESFL PCQGKLWHQW CQKNKELHRS
460 470 480 490 500
HEAYVDIKQK QELKKIREMQ YALDTGEFMK LFITEMDSKP LSEKLFFLKW
510 520 530 540 550
LTVLLDEYTS TDLSALHCKY DEKWSKILKM KEKNDITEQQ ITTNFRDEHA
560 570 580 590 600
ELDRISEELQ AATFGLEHIL REIGQIYESC ISENKNKQGL PCSFTSLPGL
610 620 630 640 650
AADMMISGFP LELMDGDAAH VPVVWVTAVL HELIQKLGDQ RVFVLSVLGI
660 670 680 690 700
QSSGKSTMLN AMFGLQFAVS AGRCTRGAFM QLIRVSEEMK MKEKLKFDYI
710 720 730 740 750
LVVDTEGLRA LELAERSTRH QDNELATFVV GLGNLTLINV FGENPSELQE
760 770 780 790 800
ILQIVVQAFM RMKKVKLNPS CMFVHQNVSA VTAGEKTMEG RRRLQKTLDE
810 820 830 840 850
MTKLAAKDEV CDAECFNDII NFDIQEDVKY FAQLWEGSPP MAPPNPSYCE
860 870 880 890 900
NIQELKQAFF GHASKSDGLE LMHLKKHIIN LWEALLNERF VFSFRNCLEI
910 920 930 940 950
STYRKLETEY SKWSWSLRKT MLDVENKLHN KIENEALHEI SESHLHDELS
960 970 980 990 1000
VKIEEVERFM SDFFAKDKNK DILIQWKASF DIKIKELQEN IVRETTRKLN
1010 1020 1030 1040 1050
EILQQRDIKR RIDAQRTHHE NTLFDKSKEL AVKLKDKAND ETILKREFDS
1060 1070 1080 1090 1100
FWKECVKQIT AETPRIKNIN VLNDMKQFLR NYKRVCVNDW KNRDIFSVPR
1110 1120 1130 1140 1150
YSEYIQIKKS GVTTRHAFGS VKLKFEAETK IRAFVNDIAR QADKIIMAYN
1160 1170 1180 1190 1200
IEKMGYNKTY IQELADYIKA RTVDYEQDCR NCVFKNEFYL DLVMSICERE
1210 1220 1230 1240 1250
NKLIKDQHRK FREANDPVLY FEKKSKEYYK IFQKYCQGAT SAAIFGEIIC
1260 1270 1280 1290 1300
QKLKEPIQKC VYKDTARDLA NEIQTDCESL NGNRSKIEKH ILKALAEQED
1310 1320 1330 1340 1350
FDKYIKYIFS PRDHFESFIR DEVNQYITDK FEVSVRPMMK QNIELLKQKI
1360 1370 1380 1390 1400
IKAAHRATTS DNTTKDVQKW LDDFTEQLSD VLIFSVKNFS GVSHDGVDDF
1410 1420 1430 1440 1450
NLLKDVIRAE LGSVASEIQC KFSTKAFPEN LEHEDRPDQV LTNHLCQCCW
1460 1470 1480 1490 1500
VQCPFCGATC TNTIENHAGD HSVPFHRVDG LKGSCYDESK CLGADFCTTL
1510 1520 1530 1540 1550
VRTSKQFYIG QWFSCQHYRT AGHVYAQWSI TPDFSELPYW KWFVCRFQTE
1560 1570 1580
LENYFEMKFD NWNVISYDWS QYTKEQAIAS LDEYVD
Length:1,586
Mass (Da):184,862
Last modified:June 20, 2018 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9CBDC63BA8E5BD86
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BX324215 Genomic DNA No translation available.

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSDART00000059970; ENSDARP00000059969; ENSDARG00000040921

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX324215 Genomic DNA No translation available.

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PaxDbiE7FEG3

Genome annotation databases

EnsembliENSDART00000059970; ENSDARP00000059969; ENSDARG00000040921

Organism-specific databases

ZFINiZDB-GENE-130530-609, zmp:0000000606

Phylogenomic databases

eggNOGiENOG502QVVR, Eukaryota
GeneTreeiENSGT00940000163472
HOGENOMiCLU_002276_3_0_1
InParanoidiE7FEG3
OrthoDBi418635at2759
TreeFamiTF335271

Gene expression databases

BgeeiENSDARG00000040921, Expressed in intestine and 8 other tissues

Family and domain databases

InterProiView protein in InterPro
IPR030383, G_VLIG_dom
IPR027417, P-loop_NTPase
SUPFAMiSSF52540, SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS51717, G_VLIG, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiE7FEG3_DANRE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: E7FEG3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: June 20, 2018
Last modified: October 7, 2020
This is version 54 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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