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Protein

Zinc finger Ran-binding domain-containing protein 2

Gene

zranb2

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

May interfere with constitutive 5'-splice site selection.UniRule annotation

GO - Molecular functioni

  • lipid antigen binding Source: ZFIN
  • lipopolysaccharide binding Source: ZFIN
  • metal ion binding Source: UniProtKB-KW
  • RNA binding Source: UniProtKB-KW

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingUniRule annotation
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger Ran-binding domain-containing protein 2UniRule annotation
Gene namesi
Name:zranb2Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
Proteomesi
  • UP000000437 Componenti: Chromosome 6

Organism-specific databases

ZFINiZDB-GENE-040426-2743 zranb2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

PTM / Processingi

Proteomic databases

PaxDbiE7F1Q7
PeptideAtlasiE7F1Q7
PRIDEiE7F1Q7

Expressioni

Gene expression databases

BgeeiENSDARG00000044332 Expressed in 30 organ(s), highest expression level in eye

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000094955

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini9 – 40RanBP2-typeInterPro annotationAdd BLAST32
Domaini65 – 94RanBP2-typeInterPro annotationAdd BLAST30

Sequence similaritiesi

Belongs to the ZRANB2 family.UniRule annotation

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiKOG1995 Eukaryota
ENOG4111QXA LUCA
GeneTreeiENSGT00730000111078
InParanoidiE7F1Q7
OMAiDLWGDNE
OrthoDBiEOG091G0MZC
TreeFamiTF105996

Family and domain databases

InterProiView protein in InterPro
IPR017337 UCP037956_Znf_RanB2
IPR001876 Znf_RanBP2
IPR036443 Znf_RanBP2_sf
PfamiView protein in Pfam
PF00641 zf-RanBP, 2 hits
PIRSFiPIRSF037956 UCP037956_ZnF_Ran, 1 hit
SMARTiView protein in SMART
SM00547 ZnF_RBZ, 2 hits
SUPFAMiSSF90209 SSF90209, 2 hits
PROSITEiView protein in PROSITE
PS01358 ZF_RANBP2_1, 2 hits
PS50199 ZF_RANBP2_2, 2 hits

Sequencei

Sequence statusi: Complete.

E7F1Q7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSGKSFRVSD GDWICPDKKC GNVNFARRTS CNRCGREKTT EAKMMKAGGT
60 70 80 90 100
EIGKTLAEKS RGLFSANDWQ CKTCGNVNWA RRSECNMCNT PKYAKLEERT
110 120 130 140 150
GYGGGFNERE NLVYNEREES DGEYDEFGRI KKKFRGKTKK DSDKKEEPKK
160 170 180 190 200
VDQDDEEEDD DDEDGDLSKY KLDDDDEDDD DDDDDEDDAD LSKYDLDDGD
210 220 230 240 250
EKKGSHSGSS RSSSRSSSSS SRSRSRSRSR SSSSSRSRSR SRSKSRSSSR
260 270 280 290 300
SGKGSASSKK RSRSPSSSPE GGQKRSRSRS SSGGRKKRRA RSHSSERRRG
310
SSGSSHSGSS SKQN
Length:314
Mass (Da):34,994
Last modified:April 5, 2011 - v2
Checksum:iA369792328ED0EA6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX324166 Genomic DNA No translation available.
RefSeqiNP_001315139.1, NM_001328210.1
UniGeneiDr.32820

Genome annotation databases

EnsembliENSDART00000104180; ENSDARP00000094955; ENSDARG00000044332
GeneIDi406716
KEGGidre:406716

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX324166 Genomic DNA No translation available.
RefSeqiNP_001315139.1, NM_001328210.1
UniGeneiDr.32820

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000094955

Proteomic databases

PaxDbiE7F1Q7
PeptideAtlasiE7F1Q7
PRIDEiE7F1Q7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000104180; ENSDARP00000094955; ENSDARG00000044332
GeneIDi406716
KEGGidre:406716

Organism-specific databases

CTDi9406
ZFINiZDB-GENE-040426-2743 zranb2

Phylogenomic databases

eggNOGiKOG1995 Eukaryota
ENOG4111QXA LUCA
GeneTreeiENSGT00730000111078
InParanoidiE7F1Q7
OMAiDLWGDNE
OrthoDBiEOG091G0MZC
TreeFamiTF105996

Gene expression databases

BgeeiENSDARG00000044332 Expressed in 30 organ(s), highest expression level in eye

Family and domain databases

InterProiView protein in InterPro
IPR017337 UCP037956_Znf_RanB2
IPR001876 Znf_RanBP2
IPR036443 Znf_RanBP2_sf
PfamiView protein in Pfam
PF00641 zf-RanBP, 2 hits
PIRSFiPIRSF037956 UCP037956_ZnF_Ran, 1 hit
SMARTiView protein in SMART
SM00547 ZnF_RBZ, 2 hits
SUPFAMiSSF90209 SSF90209, 2 hits
PROSITEiView protein in PROSITE
PS01358 ZF_RANBP2_1, 2 hits
PS50199 ZF_RANBP2_2, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiE7F1Q7_DANRE
AccessioniPrimary (citable) accession number: E7F1Q7
Entry historyiIntegrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: April 5, 2011
Last modified: September 12, 2018
This is version 52 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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