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Protein

Tape measure protein

Gene

TMP

Organism
Pneumococcus phage Dp-1 (Bacteriophage Dp-1)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Plays a role in virion tail formation. The length of the tape measure protein is proportional to the length of the phage's tail.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

  • viral tail assembly Source: UniProtKB

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processViral release from host cell, Viral tail assembly

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Tape measure protein
Short name:
TMP
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:TMP
ORF Names:ORF52
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPneumococcus phage Dp-1 (Bacteriophage Dp-1)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri59241 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiVirusesdsDNA viruses, no RNA stageCaudoviralesSiphoviridae
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiStreptococcus pneumoniae [TaxID: 1313]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008920 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei389 – 409HelicalSequence analysisAdd BLAST21
Transmembranei431 – 451HelicalSequence analysisAdd BLAST21
Transmembranei561 – 581HelicalSequence analysisAdd BLAST21
Transmembranei689 – 709HelicalSequence analysisAdd BLAST21
Transmembranei726 – 746HelicalSequence analysisAdd BLAST21
Transmembranei781 – 801HelicalSequence analysisAdd BLAST21
Transmembranei840 – 860HelicalSequence analysisAdd BLAST21
Transmembranei865 – 885HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Host membrane, Membrane, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004192901 – 1149Tape measure proteinAdd BLAST1149

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
E7DNB6

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

Database of Orthologous Groups

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OrthoDBi
VOG0900001B

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR016024 ARM-type_fold
IPR010090 Phage_tape_meas

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF10145 PhageMin_Tail, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371 SSF48371, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01760 tape_meas_TP901, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

E7DNB6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDFGSIAAKM TLDISNFTSQ LNLAQSQAQR LALESSKSFQ IGSALTGLGK
60 70 80 90 100
GLTTAVTLPL MGFAAASIKV GNEFQAQMSR VQAIAGATAE ELGRMKTQAI
110 120 130 140 150
DLGAKTAFSA KEAAQGMENL ASAGFQVNEI MDAMPGVLDL AAVSGGDVAA
160 170 180 190 200
SSEAMASSLR AFGLEANQAG HVADVFARAA ADTNAETSDM AEAMKYVAPV
210 220 230 240 250
AHSMGLSLEE TAASIGIMAD AGIKGSQAGT TLRGALSRIA KPTKAMVKSM
260 270 280 290 300
QELGVSFYDA NGNMIPLREQ IAQLKTATAG LTQEERNRHL VTLYGQNSLS
310 320 330 340 350
GMLALLDAGP EKLDKMTNAL VNSDGAAKEM AETMQDNLAS KIEQMGGAFE
360 370 380 390 400
SVAIIVQQIL EPALAKIVGA ITKVLEAFVN MSPIGQKMVV IFAGMVAALG
410 420 430 440 450
PLLLIAGMVM TTIVKLRIAI QFLGPAFMGT MGTIAGVIAI FYALVAVFMI
460 470 480 490 500
AYTKSERFRN FINSLAPAIK AGFGGALEWL LPRLKELGEW LQKAGEKAKE
510 520 530 540 550
FGQSVGSKVS KLLEQFGISI GQAGGSIGQF IGNVLERLGG AFGKVGGVIS
560 570 580 590 600
IAVSLVTKFG LAFLGITGPL GIAISLLVSF LTAWARTGEF NADGITQVFE
610 620 630 640 650
NLTNTIQSTA DFISQYLPVF VEKGTQILVK IIEGIASAVP QVVEVISQVI
660 670 680 690 700
ENIVMTISTV MPQLVEAGIK ILEALINGLV QSLPTIIQAA VQIITALFNG
710 720 730 740 750
LVQALPTLIQ AGLQILSALI NGLVQALPAI IQAAVQIIMS LVQALIENLP
760 770 780 790 800
MIIEAAMQII MGLVNALIEN IGPILEAGIQ ILMALIEGLI QVLPELITAA
810 820 830 840 850
IQIITSLLEA ILSNLPQLLE AGVKLLLSLL QGLLNMLPQL IAGALQIMMA
860 870 880 890 900
LLKAVIDFVP KLLQAGVQLL KALIQGIASL LGSLLSTAGN MLSSLVSKIA
910 920 930 940 950
SFVGQMVSGG ANLIRNFISG IGSMIGSAVS KIGSMGTSIV SKVTGFAGQM
960 970 980 990 1000
VSAGVNLVRG FINGISSMVS SAVSAAANMA SSALNAVKGF LGIHSPSRVM
1010 1020 1030 1040 1050
EQMGIYTGQG FVNGIGNMIR TTRDKAKEMA ETVTEALSDV KMDIQENGVI
1060 1070 1080 1090 1100
EKVKSVYEKM ADQLPETLPA PDFEDVRKAA GSPRVDLFNT GSDNPNQPQS
1110 1120 1130 1140
QSKNNQGEQT VVNIGTIVVR NNDDVDKLSR GLYNRSKETL SGFGNIVTP
Length:1,149
Mass (Da):120,096
Last modified:March 8, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i680E8BEED973EA89
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
HQ268735 Genomic DNA Translation: ADT64059.1

NCBI Reference Sequences

More...
RefSeqi
YP_004306940.1, NC_015274.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
10358648

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vg:10358648

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
HQ268735 Genomic DNA Translation: ADT64059.1
RefSeqiYP_004306940.1, NC_015274.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Proteomic databases

PRIDEiE7DNB6

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi10358648
KEGGivg:10358648

Phylogenomic databases

OrthoDBiVOG0900001B

Family and domain databases

InterProiView protein in InterPro
IPR016024 ARM-type_fold
IPR010090 Phage_tape_meas
PfamiView protein in Pfam
PF10145 PhageMin_Tail, 1 hit
SUPFAMiSSF48371 SSF48371, 1 hit
TIGRFAMsiTIGR01760 tape_meas_TP901, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiTMP_BPDP1
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: E7DNB6
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 3, 2012
Last sequence update: March 8, 2011
Last modified: November 7, 2018
This is version 30 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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