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UniProtKB - E6WNU1 (E6WNU1_PANSA)

Entry version 44 (07 Oct 2020)
Sequence version 1 (08 Mar 2011)
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Protein
Submitted name:

Conjugative transfer relaxase protein TraI

Gene

Pat9b_4096

Organism
Pantoea sp. (strain At-9b)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		PSP592316:G1GPG-5941-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Conjugative transfer relaxase protein TraIImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Pat9b_4096Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid pPAT9B05Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPantoea sp. (strain At-9b)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri592316 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Erwiniaceae › Pantoea › unclassified Pantoea
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001624 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Plasmid pPAT9B05

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		592316.Pat9b_4096

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini11 – 273TrwCInterPro annotationAdd BLAST263
Domaini683 – 734ssDNA_TraI_NInterPro annotationAdd BLAST52
Domaini741 – 819TraI_2BInterPro annotationAdd BLAST79
Domaini1503 – 1620TraIInterPro annotationAdd BLAST118

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni254 – 383DisorderedSequence analysisAdd BLAST130
Regioni1736 – 1757DisorderedSequence analysisAdd BLAST22
Regioni1882 – 1938DisorderedSequence analysisAdd BLAST57

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi254 – 274PolyampholyteSequence analysisAdd BLAST21
Compositional biasi1739 – 1757PolarSequence analysisAdd BLAST19
Compositional biasi1902 – 1938PolyampholyteSequence analysisAdd BLAST37

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		COG0507, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_001748_2_1_6

Identification of Orthologs from Complete Genome Data

More...OMAi		HSPNIDN

Database of Orthologous Groups

More...OrthoDBi		961809at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR014059, Conjug_relaxase_N
IPR009767, DNA_helicase_TraI
IPR027417, P-loop_NTPase
IPR040668, TraI_2B
IPR040987, TraI_N
IPR014862, TrwC

Pfam protein domain database

More...Pfami		View protein in Pfam
PF18272, ssDNA_TraI_N, 1 hit
PF07057, TraI, 1 hit
PF18340, TraI_2B, 1 hit
PF08751, TrwC, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540, SSF52540, 2 hits

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR02686, relax_trwC, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

E6WNU1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMTIAPVASA ADAAGYYSSK DNYYFLDDLQ SQWLGEGARE LGLEGPVDLD 
        60         70         80         90        100
TFTAVLHGKL PNGVEMGKDV QGSHVHRPGH DLTFSAPKSI SMLILAGGDK 
       110        120        130        140        150
RLLAAHHEAV KETLALVEQM VSARDTRDGV TRITATGKMV AALFTHDTSR 
       160        170        180        190        200
NLDPQIHTHA VLANVTELEG KWKALATDTI HGAGFIETLY RYQVSFGKLY 
       210        220        230        240        250
RTALKGKTEA LGYETEFTGG KHELWEVKGF TDAVLEEFSS RHREISARVG 
       260        270        280        290        300
EEASLKSRDV AALDTRRPKQ DISRLDDGQP VPQGEQPVTS PAGDNRTPDT 
       310        320        330        340        350
VPPERAVQPQ TLSRSDAPEQ GEPDAPDGRA VARTAEQENT LPEAPGAEQE 
       360        370        380        390        400
APQPGERPPG RDSMNEQAGP DQEPPIEKPE TPDGRARLHE RWQRQMDSVD 
       410        420        430        440        450
FDIGGVMRDA REREAARTEP GEEPPLPGEV MDAVRTAISV LSDSRTRFTY 
       460        470        480        490        500
GDLLLTAHQA GEQQHSIPEL RRALDQAISD NLLAPLDGDK GVFTSHIHLL 
       510        520        530        540        550
DELSVQSLAA DIIKENRVAN FRESPGMTPE HLKQAQRAPV AILNAPASVQ 
       560        570        580        590        600
RLRDTVEELV TMSRENGREV SVLASGAERA LTLGKSALLK DTLLQRSRVT 
       610        620        630        640        650
EKTFSLAPQS TLIIEGAEKL GLKEMLVLTG EAREKNAQLL FLDSAGRQSN 
       660        670        680        690        700
TNALSVLASA GVERLSLTAP GPGLEARVFS IQDKRDRYRA LAERFTDLSG 
       710        720        730        740        750
PDNTVTAAVT GAREQQQLTG YIRDALQNAG KLGRDTVQVE ARTPVFITAK 
       760        770        780        790        800
ERKLPVSYRP GMVLEDRSDR QEIRHYMIDR VHDDTRMLSL IDGDGVLSRV 
       810        820        830        840        850
KLSTLTADWR LFTREQLSIA QGEQLFALAA DRSAGLKARD RLTVTALENG 
       860        870        880        890        900
ALTVMREGQQ KPLRIATDRP LYVTHGYVSA PGARDNERGT VLASLSSREL 
       910        920        930        940        950
SVNMMNALAQ SGTEAEIFTG EALNRAEEKM MRLRTGRSPV ALVRQASGRE 
       960        970        980        990       1000
DVSDALETLN ANLLSDAEKA VSRAVAQMRH VSFSEVKLLE GAEDFLENVP 
      1010       1020       1030       1040       1050
ALRTEIARQV KAGDLMPVKV SGEPRFVSRA TWEMEKAIIG EIAAGKNAVE 
      1060       1070       1080       1090       1100
PLMATIAPSL LTGLTAGQQA ATTLILQSPD RFTAVQGYAG TGKTTQFKAV 
      1110       1120       1130       1140       1150
KAAIETLPES GRPLIIGLAP THRAVKEMRD TGIEAQTLKS FVLDWQQRTA 
      1160       1170       1180       1190       1200
AGEEVRYGNT LFLIDESSML GNQDTAAAYR AIAAGDGRAV PVGDVAQLES 
      1210       1220       1230       1240       1250
PESGAPFRLM QERSPIDVAV MKEIVRQRDA NLKSAVYSVI ENKAAAALEK 
      1260       1270       1280       1290       1300
INRVSPGTVP REAGEVVPLR SVTETGSPVS NIVADYIGRT KAAREQTMIV 
      1310       1320       1330       1340       1350
VQLHEDRRAI NEGIHASMVQ RKELGEKAVT VPVLDRITGG RHDFNRIGDW 
      1360       1370       1380       1390       1400
KAGQVVLANE RYLTVTGADR GTGHVLLRDE SGRMQYWSPA ELNATEIEVF 
      1410       1420       1430       1440       1450
ERREIELREG DSVRLNKTQK QAGHAAHEQY RVAELRENGE IVLKNRDGEK 
      1460       1470       1480       1490       1500
VIDPKAVTAD RHVDYAWAVT GYGAQGASTD YVIALEGTEG ARANMSGMRA 
      1510       1520       1530       1540       1550
FYISASRAKD HVQIYTDGLK DWLETLQGGK NGPATAHDAL SPEPERAQAR 
      1560       1570       1580       1590       1600
AIWAMGQPLS KTALGRAFLR GQGLKGAPLT ARIIPPTKKY PDAHLALPVY 
      1610       1620       1630       1640       1650
DGNGKTAGLT LVPLTAEAGQ PEPGEVRQLI TGGAQAAIVQ KSRDGEMIIV 
      1660       1670       1680       1690       1700
SDLQQALAAA RNKPQAGVLL LTGRHPPSAQ LLKVAGGQPG RGWRPDATLL 
      1710       1720       1730       1740       1750
RLVQAELREG LRDLPPDAPV PDERAALRAA LDALEKGQET GQNVPSAPGR 
      1760       1770       1780       1790       1800
DSAQENSRDV RAIAQQLTEG AMASPGTVPV VTERDRAQLS ALLAMRVVEA 
      1810       1820       1830       1840       1850
MKQQLPSLPG EPVPDYAALV RQASAALAAE AGGPDSAAVR AVLDILSGVS 
      1860       1870       1880       1890       1900
LPQEPGISAT TGQGDSIPAG VLKQVREEIA RERVPPGAPQ QQALSESTLA 
      1910       1920       1930 
GVARELERRP ELPSDIRGRE PEREELTRES VRHIQKER
Length:1,938
Mass (Da):210,013
Last modified:March 8, 2011 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i75D8F8E3AD94B01E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP002438 Genomic DNA Translation: ADU73076.1

NCBI Reference Sequences

More...RefSeqi		WP_013512900.1, NC_014842.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ADU73076; ADU73076; Pat9b_4096

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		pao:Pat9b_4096

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002438 Genomic DNA Translation: ADU73076.1
RefSeqiWP_013512900.1, NC_014842.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein-protein interaction databases

STRINGi592316.Pat9b_4096

Genome annotation databases

EnsemblBacteriaiADU73076; ADU73076; Pat9b_4096
KEGGipao:Pat9b_4096

Phylogenomic databases

eggNOGiCOG0507, Bacteria
HOGENOMiCLU_001748_2_1_6
OMAiHSPNIDN
OrthoDBi961809at2

Enzyme and pathway databases

BioCyciPSP592316:G1GPG-5941-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR014059, Conjug_relaxase_N
IPR009767, DNA_helicase_TraI
IPR027417, P-loop_NTPase
IPR040668, TraI_2B
IPR040987, TraI_N
IPR014862, TrwC
PfamiView protein in Pfam
PF18272, ssDNA_TraI_N, 1 hit
PF07057, TraI, 1 hit
PF18340, TraI_2B, 1 hit
PF08751, TrwC, 1 hit
SUPFAMiSSF52540, SSF52540, 2 hits
TIGRFAMsiTIGR02686, relax_trwC, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiE6WNU1_PANSA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: E6WNU1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: March 8, 2011
Last sequence update: March 8, 2011
Last modified: October 7, 2020
This is version 44 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

PlasmidImported
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