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UniProtKB - E5QCF2 (E5QCF2_CAEEL)
Protein
Submitted name:
COLlagen
Gene
col-53
Organism
Caenorhabditis elegans
Status
Names & Taxonomyi
Protein namesi | Submitted name: COLlagenImported |
Gene namesi | Name:col-53Imported ORF Names:CELE_M01A12.1Imported, M01A12.1Imported |
Organismi | Caenorhabditis elegansImported |
Taxonomic identifieri | 6239 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditina › Rhabditomorpha › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis |
Proteomesi |
|
Organism-specific databases
WormBasei | M01A12.1 ; CE45654 ; WBGene00000630 ; col-53 |
Subcellular locationi
Other locations
- collagen trimer Source: UniProtKB-KW
- integral component of membrane Source: UniProtKB-KW
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transmembranei | 12 – 37 | HelicalSequence analysisAdd BLAST | 26 |
Keywords - Cellular componenti
MembraneExpressioni
Gene expression databases
Bgeei | WBGene00000630, Expressed in pharyngeal muscle cell (C elegans) and 4 other tissues |
Structurei
3D structure databases
AlphaFoldDBi | E5QCF2 |
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 80 – 278 | DisorderedSequence analysisAdd BLAST | 199 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 98 – 112 | Basic and acidic residuesSequence analysisAdd BLAST | 15 | |
Compositional biasi | 202 – 233 | Basic and acidic residuesSequence analysisAdd BLAST | 32 |
Sequence similaritiesi
Belongs to the cuticular collagen family.ARBA annotation
Keywords - Domaini
CollagenImported, RepeatARBA annotation, Transmembrane, Transmembrane helixSequence analysisPhylogenomic databases
eggNOGi | KOG3544, Eukaryota |
GeneTreei | ENSGT00970000195927 |
HOGENOMi | CLU_001074_4_5_1 |
InParanoidi | E5QCF2 |
OMAi | YVTVICP |
OrthoDBi | 1290759at2759 |
PhylomeDBi | E5QCF2 |
Family and domain databases
InterProi | View protein in InterPro IPR008160, Collagen |
Pfami | View protein in Pfam PF01391, Collagen, 2 hits |
i Sequence
Sequence statusi: Complete.
E5QCF2-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSYIWRQLGS PTVAITLSVS TVIYVTVICP IVFIHLFGDH LNVLEDDECP
60 70 80 90 100
IQMSDLRQRV SFVREQIHEN TRKKRELASC CIGPPGMKGF PGKNSRDGYD
110 120 130 140 150
GEPGRDGQPG RPADGDSRMV CIRECPTGRP GREGGDGPKG SKGQRGRTGQ
160 170 180 190 200
QGDSAPPSIR GEPGERGDKG FPGVAGPAGE PGEPGHIYVS DGPPGKDGET
210 220 230 240 250
GPRGPPGEKG RTGRDGEDGL PGERGERGYQ GLKGEIGKRG PVGTFGPIGP
260 270
KGEPWPCESC PPPRVSPGYY VNKRNKKH
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX284601 Genomic DNA Translation: CCD71338.1 |
RefSeqi | NP_491651.3, NM_059250.5 |
Genome annotation databases
EnsemblMetazoai | M01A12.1.1; M01A12.1.1; WBGene00000630 |
GeneIDi | 172222 |
KEGGi | cel:CELE_M01A12.1 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX284601 Genomic DNA Translation: CCD71338.1 |
RefSeqi | NP_491651.3, NM_059250.5 |
3D structure databases
AlphaFoldDBi | E5QCF2 |
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 6239.M01A12.1 |
Proteomic databases
PaxDbi | E5QCF2 |
Genome annotation databases
EnsemblMetazoai | M01A12.1.1; M01A12.1.1; WBGene00000630 |
GeneIDi | 172222 |
KEGGi | cel:CELE_M01A12.1 |
Organism-specific databases
CTDi | 172222 |
WormBasei | M01A12.1 ; CE45654 ; WBGene00000630 ; col-53 |
Phylogenomic databases
eggNOGi | KOG3544, Eukaryota |
GeneTreei | ENSGT00970000195927 |
HOGENOMi | CLU_001074_4_5_1 |
InParanoidi | E5QCF2 |
OMAi | YVTVICP |
OrthoDBi | 1290759at2759 |
PhylomeDBi | E5QCF2 |
Gene expression databases
Bgeei | WBGene00000630, Expressed in pharyngeal muscle cell (C elegans) and 4 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR008160, Collagen |
Pfami | View protein in Pfam PF01391, Collagen, 2 hits |
MobiDBi | Search... |
Entry informationi
Entry namei | E5QCF2_CAEEL | |
Accessioni | E5QCF2Primary (citable) accession number: E5QCF2 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | February 8, 2011 |
Last sequence update: | February 8, 2011 | |
Last modified: | May 25, 2022 | |
This is version 70 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |