Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

LSM1 homolog, mRNA degradation associated

Gene

LSM1

Organism
Canis lupus familiaris (Dog) (Canis familiaris)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoproteinSAAS annotation

Enzyme and pathway databases

ReactomeiR-CFA-430039 mRNA decay by 5' to 3' exoribonuclease

Names & Taxonomyi

Protein namesi
Submitted name:
LSM1 homolog, mRNA degradation associatedImported
Gene namesi
Name:LSM1Imported
OrganismiCanis lupus familiaris (Dog) (Canis familiaris)Imported
Taxonomic identifieri9615 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCarnivoraCaniformiaCanidaeCanis
Proteomesi
  • UP000002254 Componenti: Chromosome 16

Organism-specific databases

VGNCiVGNC:42838 LSM1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiE2R7S6

Expressioni

Gene expression databases

BgeeiENSCAFG00000006113

Interactioni

Protein-protein interaction databases

STRINGi9615.ENSCAFP00000009190

Structurei

3D structure databases

ProteinModelPortaliE2R7S6
SMRiE2R7S6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini8 – 76SmInterPro annotationAdd BLAST69

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili93 – 120Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1782 Eukaryota
ENOG411224Q LUCA
GeneTreeiENSGT00730000111133
InParanoidiE2R7S6
KOiK12620
OMAiFHQTVER
OrthoDBiEOG091G0UEO
TreeFamiTF105846

Family and domain databases

CDDicd01728 LSm1, 1 hit
InterProiView protein in InterPro
IPR034104 Lsm1
IPR001163 LSM_dom_euk/arc
IPR010920 LSM_dom_sf
PfamiView protein in Pfam
PF01423 LSM, 1 hit
SMARTiView protein in SMART
SM00651 Sm, 1 hit
SUPFAMiSSF50182 SSF50182, 1 hit

Sequencei

Sequence statusi: Complete.

E2R7S6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNYMPGTASL IEDIDKKHLV LLRDGRTLIG FLRSIDQFAN LVLHQTVERI
60 70 80 90 100
HVGKKYGDIP RGIFVVRGEN VVLLGEIDLE KESDTPLQQV SIEEILEEQR
110 120 130
VEQQTKLEAE KLKVQALKDR GLSIPRADTL DEY
Length:133
Mass (Da):15,179
Last modified:November 30, 2010 - v1
Checksum:iFF798CDA9447037A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAEX03010393 Genomic DNA No translation available.
RefSeqiXP_532806.3, XM_532806.5

Genome annotation databases

EnsembliENSCAFT00000009901; ENSCAFP00000009190; ENSCAFG00000006113
GeneIDi475587
KEGGicfa:475587

Similar proteinsi

Entry informationi

Entry nameiE2R7S6_CANLF
AccessioniPrimary (citable) accession number: E2R7S6
Entry historyiIntegrated into UniProtKB/TrEMBL: November 30, 2010
Last sequence update: November 30, 2010
Last modified: March 28, 2018
This is version 57 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health