Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Synemin

Gene

SYNM

Organism
Bos taurus (Bovine)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
SyneminImported
Gene namesi
Name:SYNMImported
OrganismiBos taurus (Bovine)Imported
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
Proteomesi
  • UP000009136 Componenti: Chromosome 21

Organism-specific databases

VGNCiVGNC:35529 SYNM

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Intermediate filamentPROSITE-ProRule annotationSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiE1BIS6

Expressioni

Gene expression databases

BgeeiENSBTAG00000011752

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000015606

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 322IF rodInterPro annotationAdd BLAST312

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili15 – 49Sequence analysisAdd BLAST35
Coiled coili78 – 105Sequence analysisAdd BLAST28
Coiled coili113 – 150Sequence analysisAdd BLAST38
Coiled coili192 – 279Sequence analysisAdd BLAST88
Coiled coili533 – 559Sequence analysisAdd BLAST27

Sequence similaritiesi

Belongs to the intermediate filament family.PROSITE-ProRule annotationSAAS annotation

Keywords - Domaini

Coiled coilPROSITE-ProRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG410IH92 Eukaryota
ENOG4111GBF LUCA
GeneTreeiENSGT00730000110953
InParanoidiE1BIS6
KOiK10376
OMAiSWRLQTG
OrthoDBiEOG091G00OT

Family and domain databases

InterProiView protein in InterPro
IPR001664 IF
IPR018039 IF_conserved
IPR039008 IF_rod_dom
IPR030634 SYNM
PANTHERiPTHR23239 PTHR23239, 1 hit
PTHR23239:SF194 PTHR23239:SF194, 1 hit
PfamiView protein in Pfam
PF00038 Filament, 1 hit
SMARTiView protein in SMART
SM01391 Filament, 1 hit
PROSITEiView protein in PROSITE
PS00226 IF_ROD_1, 1 hit
PS51842 IF_ROD_2, 1 hit

Sequencei

Sequence statusi: Complete.

E1BIS6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLSWRLHTGP EKAELQELNA RLYDYVCRVR ELERENLLLE EELRSRRGQE
60 70 80 90 100
GLWAEAEARC TEEARGLRRQ LDELSWATAL AQGERDALRR ELRELQLLGE
110 120 130 140 150
ETRAARGRLD AELDSQRREL QEELAARAAL EALLGRLQAE RRGLDAARER
160 170 180 190 200
DVRELRARAA GLTLRYRGRV AGPAAPPLRL RELHEDCALL VTEAWRETVQ
210 220 230 240 250
RYEDEVRELE EALRRGRESR REAEEETRLC AQEAEALRRE VLELEQLRAL
260 270 280 290 300
LEEELLRVRE ASELQAEERQ REIAYLEDEK AALTLAMADR LRDYQDLVQV
310 320 330 340 350
KTGLSLEVAT YRALLEGESN PEILIVECIE NMPQEFREKS YQYTTSVLQK
360 370 380 390 400
ENERNLFPRQ KAPPASFRQS LAPRSQTPVR SDARRDVLGS GYSSFTTAWQ
410 420 430 440 450
ENAYQKTASG QTNFRTFSPT PGLLRNTEAQ LKTFPERPRT EGTKAPPASS
460 470 480 490 500
AKESAAAAEP YQERRAEEAA AASEGTWSNE RTVIWGKKTE AKATKEQERN
510 520 530 540 550
RPGTIQTKRE EKMFDSKEKA SEERNLRWEE LTKLDKEARK RESEQMREKA
560 570 580 590 600
REKESLKEES VKGREIPIRL EASQDSTAKV APQDLQTPLK EDAGDGTGRG
610 620 630 640 650
VETREAGFTL GASDTTASLK GGSMTETIAE NIVSSILKQF THSPEAEASA
660 670 680 690 700
ESFPDTKVTY VDRKEVPGDR KAKTEIVVES KLTEEIDISD EAGLDYLLSK
710 720 730 740 750
DAKEVELKGK SAERLIGDVI RLGLKGKEGR AKVVNVEIIE EPMSYVSSEK
760 770 780 790 800
EDEFSTPFEV EEIDDVSPSS RGLVEEREEA VYGESDVTCS GDAGQEARRP
810 820 830 840 850
QESVTHVEEV TEAGDLEGEQ SYFVSTPDEH PGAPEREEGS VYGQIHIEEE
860 870 880 890 900
STIRYSWQDE IVPGSRRRVR RDDVPGEKVV KPVDVPEVPL EGDTASAPWK
910 920 930 940 950
EQTRSGEFHA KPIVIEKEIK IPHEFHTSIK EGSKEPRHQL VEVIEQLEEN
960 970 980 990 1000
LPERMKEELS ALTREGQGGP AGVSFDVKKV QSAGSGAVTL VAEVNLSQTV
1010 1020 1030 1040 1050
DADQLDLEEL SKDEAGEIEK AVESVVRDSL ARRRSPGPGS PEAEAGGGFR
1060 1070 1080 1090 1100
RWATQELYSS SAGEADAGLA SPPGPVSATV EVTSPTGFVH AHVLEDVSQS
1110 1120 1130 1140 1150
GGRVQIASPG MWRTEQVSAE GRAAQAVEVS AEGQASWAEG SAGTSRSARL
1160 1170 1180 1190 1200
ITLGARQSPV STEVIFPGPD AACPEAGGTE EPGPAELPTE PPRFGRHSPF
1210 1220 1230 1240 1250
GSQQFYAQRE VIFQAPVSGV GKAGDSSQAE ESAGTQTSVK HLQLGTREGL
1260 1270 1280 1290 1300
TEQTQLTAPL SGAVELGVRE ASVLMEAWSG DGTSIRHVTI GPQRHQATEP
1310 1320 1330 1340 1350
IVPPPLEFSD SESSTHREGS ADETLATSSY TVGRNILVTE KSTFQRAVSE
1360 1370 1380 1390 1400
SPQEASAEDM SGNEVTSGVS RSFRHIQLGP AEAKTSEHIV FHGPISKTFA
1410 1420 1430 1440 1450
LAGSVDSPEV SEVADSGRTL RHVALGPKET SFTFQMDVSN VEATSRWTQE
1460 1470 1480 1490 1500
ARVLFPAGTE AEAPSVSEPG AWRDASSRND LAAGVSFQGS AGDRHQAPGE
1510 1520 1530 1540
RGKEQAEFDK TVQLQRMVDQ RSVISDEKKV ALLYLDSQEE ENEGHWF
Length:1,547
Mass (Da):170,786
Last modified:November 16, 2011 - v2
Checksum:i4963F1095B2E664A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DAAA02051763 Genomic DNA No translation available.
RefSeqiNP_001178382.1, NM_001191453.1
UniGeneiBt.105256

Genome annotation databases

EnsembliENSBTAT00000015606; ENSBTAP00000015606; ENSBTAG00000011752
GeneIDi514186
KEGGibta:514186

Similar proteinsi

Entry informationi

Entry nameiE1BIS6_BOVIN
AccessioniPrimary (citable) accession number: E1BIS6
Entry historyiIntegrated into UniProtKB/TrEMBL: November 2, 2010
Last sequence update: November 16, 2011
Last modified: May 23, 2018
This is version 52 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health