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Entry version 72 (11 Dec 2019)
Sequence version 1 (05 Oct 2010)
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Protein
Submitted name:

Conjugal transfer protein

Gene

traM

Organism
Escherichia coli
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Conjugal transfer proteinImported
Submitted name:
Conjugal transfer protein TraMImported
Submitted name:
Conjugal transfer protein, TraMImported
Submitted name:
Putative membrane proteinImported
Submitted name:
TraMImported
Submitted name:
TraM, conjugal transfer proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traMImported
ORF Names:AM465_28025Imported, B634_00042Imported, DEN86_21100Imported, ECONIH1_27580Imported, EQ830_24485Imported, ERL57_23175Imported, FNJ67_26060Imported, FNJ83_27040Imported, pec386IL_00160Imported, pEcNDM0_00042Imported, pHKU1_26Imported, pN3_030Imported, RCS53_P0022Imported, SAMEA4370330_00057Imported, YDC107_5250Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid 1Imported
Plasmid IncN plasmid N3Imported
Plasmid RCS53_pImported
Plasmid p6007-3Imported
Plasmid p94-1Imported
Plasmid pE66AnImported
Plasmid pEC386ILImported
Plasmid pECN580Imported
Plasmid pEC_L46Imported
Plasmid pEcNDM0Imported
Plasmid pEcNDM1Imported
Plasmid pHKU1Imported
Plasmid pKPC-629Imported
Plasmid pLK75Imported
Plasmid pNDM-BTRImported
Plasmid pSS20EcIncNImported
Plasmid pYCD107_70Imported
Plasmid pYD626EImported
Plasmid pYDC107_70Imported
Plasmid pZS50Imported
Plasmid rcs53_pImported
Plasmid unnamed2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coliImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri562 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000289384 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000315727 Componenti: Plasmid p6007-3
  • UP000289325 Componenti: Unassembled WGS sequence
  • UP000318738 Componenti: Plasmid p94-1
  • UP000318441 Componenti: Plasmid 1
  • UP000308888 Componenti: Plasmid rcs53_p
  • UP000264112 Componenti: Plasmid unnamed2
  • UP000297822 Componenti: Unassembled WGS sequence
  • UP000030317 Componenti: Plasmid pKPC-629
  • UP000238802 Componenti: Plasmid pYCD107_70

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei43 – 64HelicalSequence analysisAdd BLAST22
Transmembranei76 – 95HelicalSequence analysisAdd BLAST20

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 27Sequence analysisAdd BLAST27
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501508864628 – 97Sequence analysisAdd BLAST70

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

SignalSequence analysis, Transmembrane, Transmembrane helixSequence analysis

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D9Z5N8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTTLFKKYGP AVVMGVLSIA LPQIALAAGT DTGESTATSI QTWLSTWIPI
60 70 80 90
GCAIAIMVSC FMWMLHVIPA SFIPRIVISL IGIGSASFLV SLTGVGS
Length:97
Mass (Da):10,101
Last modified:October 5, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i74BEE819C62E43CF
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
GU371929 Genomic DNA Translation: ADL14188.1
JN566044 Genomic DNA Translation: AEX55265.1
JX469383 Genomic DNA Translation: AGO88817.1
JX515587 Genomic DNA Translation: AGO88898.1
KF182187 Genomic DNA Translation: AGP03414.1
KC960485 Genomic DNA Translation: AGW00967.1
KF534788 Genomic DNA Translation: AGW01221.1
KF914891 Genomic DNA Translation: AHI13654.1
KJ933392 Genomic DNA Translation: AID58600.1
KJ440076 Genomic DNA Translation: AIU96995.1
CP009862 Genomic DNA Translation: AIX66973.1
CP025710 Genomic DNA Translation: AUO37367.1
CP032203 Genomic DNA Translation: AXZ05452.1
FR850039 Genomic DNA Translation: CCA62532.1
HF545433 Genomic DNA Translation: CCN79896.1
CP041525 Genomic DNA Translation: QDM73667.1
CP041579 Genomic DNA Translation: QDN43958.1
SCGH01000063 Genomic DNA Translation: RXA35504.1
SDDW01000035 Genomic DNA Translation: RXJ26991.1
LT985266 Genomic DNA Translation: SPE00457.1
QESR01000034 Genomic DNA Translation: TFY46104.1
LR595886 Genomic DNA Translation: VUD38681.1

NCBI Reference Sequences

More...
RefSeqi
WP_001749962.1, NZ_VOHF01000143.1
YP_003829294.1, NC_014385.1
YP_004558200.1, NC_015599.1
YP_006953634.1, NC_019082.1
YP_007349463.1, NC_020086.1
YP_008574841.1, NC_022374.1
YP_008574953.1, NC_022375.1
YP_009023130.1, NC_023909.1
YP_009023211.1, NC_023910.1
YP_009060552.1, NC_024967.1
YP_009071482.1, NC_025183.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AIX66973; AIX66973; ECONIH1_27580
KZJ51728; KZJ51728; AWG90_02130

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
10752097
13906569
15152810
17035656
17035747
18983631
18983713
20467073
20493554
39674194
9538230

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GU371929 Genomic DNA Translation: ADL14188.1
JN566044 Genomic DNA Translation: AEX55265.1
JX469383 Genomic DNA Translation: AGO88817.1
JX515587 Genomic DNA Translation: AGO88898.1
KF182187 Genomic DNA Translation: AGP03414.1
KC960485 Genomic DNA Translation: AGW00967.1
KF534788 Genomic DNA Translation: AGW01221.1
KF914891 Genomic DNA Translation: AHI13654.1
KJ933392 Genomic DNA Translation: AID58600.1
KJ440076 Genomic DNA Translation: AIU96995.1
CP009862 Genomic DNA Translation: AIX66973.1
CP025710 Genomic DNA Translation: AUO37367.1
CP032203 Genomic DNA Translation: AXZ05452.1
FR850039 Genomic DNA Translation: CCA62532.1
HF545433 Genomic DNA Translation: CCN79896.1
CP041525 Genomic DNA Translation: QDM73667.1
CP041579 Genomic DNA Translation: QDN43958.1
SCGH01000063 Genomic DNA Translation: RXA35504.1
SDDW01000035 Genomic DNA Translation: RXJ26991.1
LT985266 Genomic DNA Translation: SPE00457.1
QESR01000034 Genomic DNA Translation: TFY46104.1
LR595886 Genomic DNA Translation: VUD38681.1
RefSeqiWP_001749962.1, NZ_VOHF01000143.1
YP_003829294.1, NC_014385.1
YP_004558200.1, NC_015599.1
YP_006953634.1, NC_019082.1
YP_007349463.1, NC_020086.1
YP_008574841.1, NC_022374.1
YP_008574953.1, NC_022375.1
YP_009023130.1, NC_023909.1
YP_009023211.1, NC_023910.1
YP_009060552.1, NC_024967.1
YP_009071482.1, NC_025183.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiAIX66973; AIX66973; ECONIH1_27580
KZJ51728; KZJ51728; AWG90_02130
GeneIDi10752097
13906569
15152810
17035656
17035747
18983631
18983713
20467073
20493554
39674194
9538230

Family and domain databases

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD9Z5N8_ECOLX
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D9Z5N8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: December 11, 2019
This is version 72 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

PlasmidImported
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