Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 41 (10 Apr 2019)
Sequence version 1 (05 Oct 2010)
Previous versions | rss
Other tutorials and videosHelp videoFeedback
Protein
Submitted name:

Uncharacterized protein

Gene

VOLCADRAFT_106340

Organism
Volvox carteri f. nagariensis
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Uncharacterized proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:VOLCADRAFT_106340Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiVolvox carteri f. nagariensisImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3068 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeChlorophytaChlorophyceaeChlamydomonadalesVolvocaceaeVolvox
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001058 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3067.XP_002954394.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini370 – 659Helicase ATP-bindingInterPro annotationAdd BLAST290
Domaini1115 – 1215Helicase C-terminalInterPro annotationAdd BLAST101
Domaini1293 – 1389Dicer dsRNA-binding foldInterPro annotationAdd BLAST97
Domaini1941 – 2005RNase IIIInterPro annotationAdd BLAST65
Domaini2109 – 2169RNase IIIInterPro annotationAdd BLAST61
Domaini2354 – 2375RNase IIIInterPro annotationAdd BLAST22

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the helicase family. Dicer subfamily.PROSITE-ProRule annotation

Phylogenomic databases

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
D8U6P3

Database of Orthologous Groups

More...
OrthoDBi
990652at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00079 HELICc, 1 hit
cd00593 RIBOc, 2 hits

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.1520.10, 1 hit
3.30.1490.20, 1 hit
3.30.160.380, 1 hit
3.40.50.1820, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR029058 AB_hydrolase
IPR013815 ATP_grasp_subdomain_1
IPR038248 Dicer_dimer_sf
IPR005034 Dicer_dimerisation_dom
IPR007751 DUF676_lipase-like
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf
IPR004344 TTL/TTLL_fam

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03368 Dicer_dimer, 1 hit
PF05057 DUF676, 1 hit
PF00271 Helicase_C, 1 hit
PF00636 Ribonuclease_3, 1 hit
PF03133 TTL, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00535 RIBOc, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 2 hits
SSF53474 SSF53474, 1 hit
SSF69065 SSF69065, 2 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51327 DICER_DSRBF, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 3 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D8U6P3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPAEAKPDHI FVLVHGLADT LHAWDNCIKE LCKWGSPNVL FYASAVNARF
60 70 80 90 100
RTHDGFDKCG ERLANEIREV VRQHPQLTKL SLIGHSMGGM IARYAIGTLF
110 120 130 140 150
NPSDSTICGL KPVHYITLAT PHLGLTTDDG PAQVPFVAWA GGIPVLGRQV
160 170 180 190 200
KSALQSMAHG VARAVFRHTG RHFLALDGAP GELPLLMMLA MDLPDRGQYF
210 220 230 240 250
LSALAAFASR ACYGNVGGDH WVSWTNATLR ATDDLPCIPP DIVRHGRGVV
260 270 280 290 300
REDPPDAGIG FSSSSPDSNS AGAGGGGGGG GGQLLDVVAL EGQAESPQQV
310 320 330 340 350
VAFALGRLGR LPWRRVDVSF GGALVGTAHN NIQATRWTNL VGFSVLGHLR
360 370 380 390 400
GHLQAVEGLL AALEGYQRDL LQAAAKDDSI VYLETGMGKT RIALELISRE
410 420 430 440 450
LPSLRREGQV AVVLAPSVPL VRQQAEVLAS VPTSGLPTPA PAPGGAPGPS
460 470 480 490 500
RCCDVAVAGA LASPPKSKKA CKPHNAGSRS GSRSAGAAGG GGSLLRVAYL
510 520 530 540 550
GGDSSPSSWG PERWREMLRR VDVLVCTPAV LLGALVHALV RISDIGLVVV
560 570 580 590 600
DEAHHCREQH PYAVLMREFI GRQSPAPALP PAPSAGGEAA RRYGSGGGSS
610 620 630 640 650
GGGSGVVSCG SGAASTADEG EPDRPAKPPS RPRVLGLTAS PLTPMDLQSN
660 670 680 690 700
LCGGRLITPL DRGPPVGEST RPRAKICWVG AGTDLAPPPP LPLNSNPDPV
710 720 730 740 750
DPQQAVREHQ AASELLSQQS QLLVQGLAFS RGLLQLAEKV LARRDKLQRL
760 770 780 790 800
QHLGEIGLEQ LGLSNETVPA ALQSALLGVG PGSSGRNEYD ASLRDIRIMK
810 820 830 840 850
SQIFSLEAAL SGLGPWPALA AAAGDIFAGR TTTTTSITTN SASRGGGAGG
860 870 880 890 900
GAGASNPPSQ AVCVEAVELL ADEDFSRVLE PTDLGPPPSA ELGRELMEAP
910 920 930 940 950
RGGAPVLATS DMLELNDALN GVGLPQLPQL PGRGPPSLGE RVSCAVLTVI
960 970 980 990 1000
MEGFLSLIAP HLHEETAAIA LGYGPALLVH GGWTSSGRGV LTPWVLRLLG
1010 1020 1030 1040 1050
LVPTEVLQEQ VLGVVPEQSG STAAAAGGGG GGVGGWPVRL LHRRAVEAPG
1060 1070 1080 1090 1100
GSNDNNSKRA AGGPGGQQQQ QEREGGEGAR GSSGTGGGSS GAATAAAAAT
1110 1120 1130 1140 1150
AAAHWSAIVF CERKQQQEQV RQDFAAGRLN LLLSTSVGAE GLDFSHCTLV
1160 1170 1180 1190 1200
AALDLPKHVT AFVQSGGRAR APGAEHWLLV STPEEDAAAT KLLQAEQHLM
1210 1220 1230 1240 1250
LQAHSLATAN FRALSGGTAG TSPPAVEGAM ELDVGLDLGG AGSAGGRGEG
1260 1270 1280 1290 1300
DVEVEEGEVY GGEEPPPPLV CEAGDEMALE VPATGARLPA VWAVDLLLQL
1310 1320 1330 1340 1350
CCQLPGNDGS TVLQPIFRWQ SLGPGPHDPR FTYRVFLPAN LGMEPVDGPP
1360 1370 1380 1390 1400
CATKGLAKKL ASLEAVRRLW ERGDLDDHLR LKITRRGATK AAHAAAFGGC
1410 1420 1430 1440 1450
GCRGLDDSVV AAATAAAAPG EQQQPPEGQQ EGLGVPSASG AAATPAPAPA
1460 1470 1480 1490 1500
PAPPLAALCW GVVLHGELPP LPAFDLHLPD GGKGELLVQA TPVLVGPLPA
1510 1520 1530 1540 1550
GPLLDRVINT LGCVLARLVT APCPAAAVRS AISAAADIAG KMLPFRRVPF
1560 1570 1580 1590 1600
AEVAEGAEGG EQQGLEVRRL QRAAARDSGA AGEVLEFIDW DVVRQLATVP
1610 1620 1630 1640 1650
TPLAEGHEPD EGPERQVQRH GLLLSLNTYR VCGLAGPRTA GDVDMAAADG
1660 1670 1680 1690 1700
GRGTETCTAR ESNAASDKGS DGVAARGIEA DEGAGAAAVA VGGGTNSNAN
1710 1720 1730 1740 1750
GDGPDGDAVP CKLMIQELSM YGKGRRDWLH SRYDRGYGDA QGKGGGTGGG
1760 1770 1780 1790 1800
GQARTSTDSV HGTSETHAKR PLPTDPDLPG SGAAVFTPAG EHPVPGSFRT
1810 1820 1830 1840 1850
RCVRPSPVPS PSAPPTPAPT PVELDGEGTS ADEDGDASRH QPTTANCNVG
1860 1870 1880 1890 1900
GDEAAEVSEA ENGGGDEILD DAAAAAAAGG TGRAPPPRRQ RERRHMFREL
1910 1920 1930 1940 1950
GPLRPDRVAL YPMDLHRWRL LQGLPSIMWR VEGLTAASDY LDNTLEPASF
1960 1970 1980 1990 2000
QPGCPEPCVR DRRLLLVATS LTAPAAGDPV FNNDRLEFLG DAVLKLLAHV
2010 2020 2030 2040 2050
YVYLRERVAG VNGKRLADAV EALIGAHVLP AVEAEVARAA GADPASGVLG
2060 2070 2080 2090 2100
VLGAAAAGAG QLRVTRDIRT CSSAVQVAIY DALQFCTGVG LLPPDTPAVI
2110 2120 2130 2140 2150
LERFDQRNVL AVEELLGHTF AHPKLCVQAL THVSHPTASS CGGGYQRVEF
2160 2170 2180 2190 2200
LGDGVLGMVA SVWAFCSVPS RDTIRPVPTS STSLWIRVPS PHGGTAEHMT
2210 2220 2230 2240 2250
THRTALVSNG PLAAAAVRRG LHQHLRTGSM SLMAAINNFV AAYQEGDEGP
2260 2270 2280 2290 2300
ETYLAQRYLE SPYLVGGKKF DLRIYALVTS YSPLRIFLHR TRHDAVARVG
2310 2320 2330 2340 2350
QDRVLVTTTE RVAKNKRAEK RLMREQWQQQ AGGSKAPRKA LAAGDLEGEQ
2360 2370 2380 2390
DALRAPKALA DLVEALVGAV YLDTGGDLGA AERAVANIML A
Length:2,391
Mass (Da):247,829
Last modified:October 5, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9818F29553CC4EFE
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
GL378363 Genomic DNA Translation: EFJ44544.1

NCBI Reference Sequences

More...
RefSeqi
XP_002954394.1, XM_002954348.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
9624463

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vcn:VOLCADRAFT_106340

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL378363 Genomic DNA Translation: EFJ44544.1
RefSeqiXP_002954394.1, XM_002954348.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protein-protein interaction databases

STRINGi3067.XP_002954394.1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi9624463
KEGGivcn:VOLCADRAFT_106340

Phylogenomic databases

InParanoidiD8U6P3
OrthoDBi990652at2759

Family and domain databases

CDDicd00079 HELICc, 1 hit
cd00593 RIBOc, 2 hits
Gene3Di1.10.1520.10, 1 hit
3.30.1490.20, 1 hit
3.30.160.380, 1 hit
3.40.50.1820, 1 hit
InterProiView protein in InterPro
IPR029058 AB_hydrolase
IPR013815 ATP_grasp_subdomain_1
IPR038248 Dicer_dimer_sf
IPR005034 Dicer_dimerisation_dom
IPR007751 DUF676_lipase-like
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR027417 P-loop_NTPase
IPR000999 RNase_III_dom
IPR036389 RNase_III_sf
IPR004344 TTL/TTLL_fam
PfamiView protein in Pfam
PF03368 Dicer_dimer, 1 hit
PF05057 DUF676, 1 hit
PF00271 Helicase_C, 1 hit
PF00636 Ribonuclease_3, 1 hit
PF03133 TTL, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SM00535 RIBOc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
SSF53474 SSF53474, 1 hit
SSF69065 SSF69065, 2 hits
PROSITEiView protein in PROSITE
PS51327 DICER_DSRBF, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS00517 RNASE_3_1, 1 hit
PS50142 RNASE_3_2, 3 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD8U6P3_VOLCA
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D8U6P3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: April 10, 2019
This is version 41 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again