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Protein

DNA ligase

Gene

SELMODRAFT_422836

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotation
Biological processDNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation
LigandATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:SELMODRAFT_422836Imported
OrganismiSelaginella moellendorffii (Spikemoss)Imported
Taxonomic identifieri88036 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiopsidaSelaginellalesSelaginellaceaeSelaginella
Proteomesi
  • UP000001514 Componenti: Unassembled WGS sequence

Interactioni

Protein-protein interaction databases

STRINGi88036.EFJ15400

Structurei

3D structure databases

ProteinModelPortaliD8SJP8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini330 – 473DNA_LIGASE_A3InterPro annotationAdd BLAST144
Domaini640 – 727BRCTInterPro annotationAdd BLAST88
Domaini786 – 894BRCTInterPro annotationAdd BLAST109

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

eggNOGiKOG0966 Eukaryota
COG1793 LUCA
InParanoidiD8SJP8
KOiK10777
OMAiGTHIVRM
OrthoDBiEOG093600VG

Family and domain databases

CDDicd00027 BRCT, 1 hit
Gene3Di1.10.3260.10, 1 hit
3.40.50.10190, 2 hits
InterProiView protein in InterPro
IPR001357 BRCT_dom
IPR036420 BRCT_dom_sf
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR029710 LIG4
IPR012340 NA-bd_OB-fold
PANTHERiPTHR10459:SF7 PTHR10459:SF7, 1 hit
PfamiView protein in Pfam
PF16589 BRCT_2, 1 hit
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 1 hit
PF04675 DNA_ligase_A_N, 1 hit
SMARTiView protein in SMART
SM00292 BRCT, 2 hits
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
SSF52113 SSF52113, 1 hit
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS50172 BRCT, 2 hits
PS00697 DNA_LIGASE_A1, 1 hit
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

D8SJP8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGENTVRFSA VSDMLERISK SKKLPVKRKT FRTFLDHFYT DREYFSVMRL
60 70 80 90 100
VLPELDRERG NYGLKESVLA KCLADALGLA KGSSDADKLV NWRKGGSSVG
110 120 130 140 150
KNAGNFALVA AEIVGSRQSH TSGGLTVKRV NELLDQLAEV KSREEKSKVL
160 170 180 190 200
AEFINKTNPV EMKWLVMIIL KDLKLGISEK TVFKEFHPDA DEVYNKTCDL
210 220 230 240 250
KLVCEKLVDP KVRFKRQDIE VGKAVRPQLA SRVKNAEDAW KRMRGKRVIA
260 270 280 290 300
ECKFDGDRCQ VHKDGNEVHF FSRSSIDHVE FAAAMSSVIC ENVKASKCIL
310 320 330 340 350
DGEMVVWNRV TNKFAEFGTI HAVAKNAKDG VQSDEQLCYI VFDILYLDDC
360 370 380 390 400
SVIHQPLCER QKLLEQKVTT VPGRLELLQP DRRNCGGQLW SITPQSAADV
410 420 430 440 450
EKFFLMTVDN REEGIVVKDF DSKWEPGDRS GKWMKLKPDY VKESEMDVLI
460 470 480 490 500
IGGYYGSGRR GGDVAQFLLG IAERPASGYP TKFHSFCKVG TGLSDEECRV
510 520 530 540 550
LVDKLRPYFR KYDKNTKPPS YYVVTNNAKE RPDVWIEQPD KSVLLEVKSD
560 570 580 590 600
IRKIKSEVFA SPYSLRFPRV TRVRYDKPWN ECLDIQELVR MVAEDAGAGV
610 620 630 640 650
NGDGDGGRKK KQERAPKKKA PKLPLLAPHM QQTDVSGVKK VSDMLSGLVF
660 670 680 690 700
FLVNFKLEEK ERFHKLVAEY GGKFSMNLNG DVTHVLAESP KGLLYETATK
710 720 730 740 750
RGDVIHSSWF MDSIAAKELL PLRPKYMLHL SYKTRETLKD TLDEFGDHYF
760 770 780 790 800
VEVDEADMKQ LFGRMRVEDL SVNEKDVDEH RGSLGDRKNI FEGCSFYFYY
810 820 830 840 850
PREAAVADEA MIAGVVLRRL EVEVELRKGA VKPSLAGATH MIVFWDSERD
860 870 880 890 900
HSEAGLSFSE NKLVSSKKLR VLSHRWLEEA LRRDSVPPED DYDVRQALGS
910 920 930 940 950
RLVEESPPRQ EEEPELLKEN SEHEAGDEEQ DEERVSVFDT LVLEEMDGPE
960 970 980 990 1000
NEELPPKKKR HLQGMATPTL AKTLTLPTTS SSLDLWPTTQ EAGANPTLVI
1010 1020 1030 1040 1050
SETLKLPSFE PQKLAACSET LKLPSLEPRK LAACSETLKL PETPPATVIT
1060 1070 1080 1090 1100
ETVKLPSFEP DKAFDNLLAD FAFLPSITRE APAKGFAAPQ QNKPRIVQEE
1110 1120 1130 1140 1150
VAKEDTAMKK SKASYKIEVP VEGFAGGFAA PQRNEPGAFQ ENGSSSREEI
1160 1170
AMPMPAKKKN KTSLKDVVRN LL
Length:1,172
Mass (Da):132,104
Last modified:October 5, 2010 - v1
Checksum:i783D80308F329333
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377623 Genomic DNA Translation: EFJ15400.1
RefSeqiXP_002983499.1, XM_002983453.1

Genome annotation databases

EnsemblPlantsiEFJ15400; EFJ15400; SELMODRAFT_422836
GeneIDi9655059
GrameneiEFJ15400; EFJ15400; SELMODRAFT_422836
KEGGismo:SELMODRAFT_422836

Similar proteinsi

Entry informationi

Entry nameiD8SJP8_SELML
AccessioniPrimary (citable) accession number: D8SJP8
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: March 28, 2018
This is version 42 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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