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Entry version 63 (26 Feb 2020)
Sequence version 1 (05 Oct 2010)
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Protein

AP2/ERF domain-containing protein

Gene

SELMODRAFT_440731

Organism
Selaginella moellendorffii (Spikemoss)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDNA-bindingSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
AP2/ERF domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:SELMODRAFT_440731Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSelaginella moellendorffii (Spikemoss)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri88036 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaLycopodiopsidaSelaginellalesSelaginellaceaeSelaginella
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001514 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
88036.EFJ29345

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1550 – 1607AP2/ERFInterPro annotationAdd BLAST58

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1518 – 1562DisorderedSequence analysisAdd BLAST45

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili1222 – 1242Sequence analysisAdd BLAST21

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1518 – 1542PolarSequence analysisAdd BLAST25

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0409 Eukaryota
KOG4153 Eukaryota
COG0191 LUCA
COG2084 LUCA
COG3395 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_002829_3_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
D8RDZ9

Database of Orthologous Groups

More...
OrthoDBi
261379at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00018 AP2, 1 hit
cd00947 TBP_aldolase_IIB, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.1040.10, 2 hits
3.20.20.70, 1 hit
3.30.730.10, 1 hit
3.40.50.10840, 1 hit
3.40.980.20, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002204 3-OH-isobutyrate_DH-rel_CS
IPR037051 4-carb_acid_sugar_kinase_N_sf
IPR008927 6-PGluconate_DH-like_C_sf
IPR013328 6PGD_dom2
IPR006115 6PGDH_NADP-bd
IPR013785 Aldolase_TIM
IPR001471 AP2/ERF_dom
IPR036955 AP2/ERF_dom_sf
IPR016177 DNA-bd_dom_sf
IPR010737 DUF1537
IPR000771 FBA_II
IPR036291 NAD(P)-bd_dom_sf
IPR029154 NADP-bd
IPR031475 NBD_C
IPR042213 NBD_C_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00847 AP2, 1 hit
PF01116 F_bP_aldolase, 1 hit
PF14833 NAD_binding_11, 2 hits
PF03446 NAD_binding_2, 2 hits
PF17042 NBD_C, 1 hit
PF07005 SBD_N, 1 hit

Protein Motif fingerprint database; a protein domain database

More...
PRINTSi
PR00367 ETHRSPELEMNT

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00380 AP2, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48179 SSF48179, 2 hits
SSF51735 SSF51735, 2 hits
SSF54171 SSF54171, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00895 3_HYDROXYISOBUT_DH, 1 hit
PS51032 AP2_ERF, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D8RDZ9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAQSAAKVAF IGLGAMGFGM ASTLVRSGFQ VQGYDISEPA MQRFCEIGGS
60 70 80 90 100
SSSSPAHAAQ DASILIVMVT NSDQADAVLF GSNGAAAVVP EGAVIVICST
110 120 130 140 150
VAPGYIRKLD KKLTERKLYL VDAPVSGGVA RAANGTLTIM AAGSKVAFDK
160 170 180 190 200
AMPVLSGVHI AASAEAMAFA ARVGLNTRLV YEVVSHSSGS SWMFINRVPH
210 220 230 240 250
MLDDDYFPHS ALNIFVKDLG IVLSEGREHV FPLPLAAAAH QQFLLGSSSG
260 270 280 290 300
YGREDDAAVV KVWEKTAGIK VSSPTIDSLK TPEDAGRPEK IAFIGLGAMG
310 320 330 340 350
LRMASRLVAK KFSVCGFDVS KSALTKFEEI GGLAGRSPAT AAKGSQVLFI
360 370 380 390 400
MVATEDQIEN VLFADDGALS ALTAEAAIVI CSTVSPDYIT NLGTRLEDRG
410 420 430 440 450
IHMVDAPVSG GTKGAANGSL SIMASGTNEG LKMAYPVLSA LGDKLYFIGG
460 470 480 490 500
GAGAGSTMKM VNQLLAGIHL VVAAEAVALG ARAGLDTQLV FDIISNAAGS
510 520 530 540 550
SWMFVDRVPR MLSGDYSSHS NLDTFVKDLG IVLDVAKKLC IAVPLASAAH
560 570 580 590 600
QLFLAGSASG LGKQDDAAVV KVYQQLSGVK VATTKSQAES SDLKAESASL
610 620 630 640 650
LPIIAKDVAF TNLPEEYHED PIEAICDAKR EEKAKVLVVL DDDPTGTQTV
660 670 680 690 700
HDVTVLTEWG IESIKKEFQK SPACFFILTN SRALSTGKAV ELTKAICRNV
710 720 730 740 750
DAAASSCGNV GYTIVLRGDS TLRGHFPEEA DAVCDVIGES DAWIICPFFW
760 770 780 790 800
QGGRYTINDI HYVSDGTMLV PAGQTEFAQD SVFGYKSSNL REWVEEKTKG
810 820 830 840 850
RVSFGDVASV SIATIRKGGP SAVCEQLCNL SKNSICVVNA ASERDISVFA
860 870 880 890 900
AGMIQAEGKG KRFLCRTAAG FVSARIGLRS KPPVTPVDLE ADKQTSWLNG
910 920 930 940 950
GLILVGSYVP KTTKQVEELK LKRRGSSLQS LDVYVIAMTM SPDNVRDAEI
960 970 980 990 1000
ARVSNAADVF LSAGQDTLIV TSRVLVTGSS NLESLDIGNK VSSALVEIVK
1010 1020 1030 1040 1050
RIHTRPRYII AKGGITSSDL ATKAMGASRA EVVGQALAGV PMWKLGPGSR
1060 1070 1080 1090 1100
HPGIPYIVFP GNVGGVDALA TVVSRWARPK RKSTKDILMD AESGGYAVGA
1110 1120 1130 1140 1150
FNIYNLEGAK AVISAAEAEK SPAILQLLIG MVGGLWWPPA LLLQKVLTYV
1160 1170 1180 1190 1200
PITVHFDHGN DEAELVETLE LGFDSIMADG SHLAFDDNVA FTKRIASMAH
1210 1220 1230 1240 1250
SKGLVVEAEL GRLSGTEDDQ TVEEYESKLT DIDQAKEFLE KTCVDGLAVC
1260 1270 1280 1290 1300
VGNVHGKYPA SGPKLDMELL KFDMQELRKT AADRGVLLVL HGASGLPASM
1310 1320 1330 1340 1350
IQACIDNGVR KFNVNTELRT AYTEAINGGW TPLQPQFGTT WPNFLANQES
1360 1370 1380 1390 1400
ESEKRKREER EKKKVVLDWI LIKQRYLYFI HPSQMCRGLS EPIDPPPGDY
1410 1420 1430 1440 1450
SDDGWLPKWL LDWEMDVEDL NSLPPPQMEL SPDDLFQDEL LLQDAIWSIS
1460 1470 1480 1490 1500
SSSASSNAAS PMDSSPITPN LQQIELTVQE EERRQQPPPP PLVDEIPAKI
1510 1520 1530 1540 1550
PKLEAQDANA GSLLRQFARE EQSQTDPASA IVETQGGESK RSSPAQPIKH
1560 1570 1580 1590 1600
YRGVRQRPSG KWGAEIRDPQ QRVRLWLGSY GTAEAAALAY DAAARRIKGK
1610 1620 1630 1640 1650
KAKLNFKDEE SLAYAKLHHP PAALRSKKRA RRCTSGDGGG GGDGIFQTYT
1660 1670 1680
RGYGDILGAL EDMPPALKDK FARFLSGCYD SSS
Length:1,683
Mass (Da):179,960
Last modified:October 5, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8DD656A39BF9A6DF
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
GL377577 Genomic DNA Translation: EFJ29345.1

NCBI Reference Sequences

More...
RefSeqi
XP_002969257.1, XM_002969211.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
EFJ29345; EFJ29345; SELMODRAFT_440731

Gramene; a comparative resource for plants

More...
Gramenei
EFJ29345; EFJ29345; SELMODRAFT_440731

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
smo:SELMODRAFT_440731

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
GL377577 Genomic DNA Translation: EFJ29345.1
RefSeqiXP_002969257.1, XM_002969211.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi88036.EFJ29345

Genome annotation databases

EnsemblPlantsiEFJ29345; EFJ29345; SELMODRAFT_440731
GrameneiEFJ29345; EFJ29345; SELMODRAFT_440731
KEGGismo:SELMODRAFT_440731

Phylogenomic databases

eggNOGiKOG0409 Eukaryota
KOG4153 Eukaryota
COG0191 LUCA
COG2084 LUCA
COG3395 LUCA
HOGENOMiCLU_002829_3_0_1
InParanoidiD8RDZ9
OrthoDBi261379at2759

Family and domain databases

CDDicd00018 AP2, 1 hit
cd00947 TBP_aldolase_IIB, 1 hit
Gene3Di1.10.1040.10, 2 hits
3.20.20.70, 1 hit
3.30.730.10, 1 hit
3.40.50.10840, 1 hit
3.40.980.20, 1 hit
InterProiView protein in InterPro
IPR002204 3-OH-isobutyrate_DH-rel_CS
IPR037051 4-carb_acid_sugar_kinase_N_sf
IPR008927 6-PGluconate_DH-like_C_sf
IPR013328 6PGD_dom2
IPR006115 6PGDH_NADP-bd
IPR013785 Aldolase_TIM
IPR001471 AP2/ERF_dom
IPR036955 AP2/ERF_dom_sf
IPR016177 DNA-bd_dom_sf
IPR010737 DUF1537
IPR000771 FBA_II
IPR036291 NAD(P)-bd_dom_sf
IPR029154 NADP-bd
IPR031475 NBD_C
IPR042213 NBD_C_sf
PfamiView protein in Pfam
PF00847 AP2, 1 hit
PF01116 F_bP_aldolase, 1 hit
PF14833 NAD_binding_11, 2 hits
PF03446 NAD_binding_2, 2 hits
PF17042 NBD_C, 1 hit
PF07005 SBD_N, 1 hit
PRINTSiPR00367 ETHRSPELEMNT
SMARTiView protein in SMART
SM00380 AP2, 1 hit
SUPFAMiSSF48179 SSF48179, 2 hits
SSF51735 SSF51735, 2 hits
SSF54171 SSF54171, 1 hit
PROSITEiView protein in PROSITE
PS00895 3_HYDROXYISOBUT_DH, 1 hit
PS51032 AP2_ERF, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD8RDZ9_SELML
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D8RDZ9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: February 26, 2020
This is version 63 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
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Main funding by: National Institutes of Health

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