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Protein
Submitted name:

Cytochrome c-type biogenesis protein CcmF

Gene

ccmF

Organism
Escherichia coli MS 115-1
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.Imported

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Cytochrome c-type biogenesis protein CcmFImported
Gene namesi
Name:ccmFImported
ORF Names:HMPREF9540_02611Imported
OrganismiEscherichia coli MS 115-1Imported
Taxonomic identifieri749537 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000032708 Componenti: Unassembled WGS sequence

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei6 – 29HelicalSequence analysisAdd BLAST24
Transmembranei41 – 62HelicalSequence analysisAdd BLAST22
Transmembranei96 – 114HelicalSequence analysisAdd BLAST19
Transmembranei121 – 142HelicalSequence analysisAdd BLAST22
Transmembranei178 – 198HelicalSequence analysisAdd BLAST21
Transmembranei210 – 230HelicalSequence analysisAdd BLAST21
Transmembranei250 – 267HelicalSequence analysisAdd BLAST18
Transmembranei274 – 294HelicalSequence analysisAdd BLAST21
Transmembranei314 – 332HelicalSequence analysisAdd BLAST19
Transmembranei353 – 374HelicalSequence analysisAdd BLAST22
Transmembranei394 – 412HelicalSequence analysisAdd BLAST19
Transmembranei424 – 444HelicalSequence analysisAdd BLAST21
Transmembranei450 – 472HelicalSequence analysisAdd BLAST23
Transmembranei484 – 503HelicalSequence analysisAdd BLAST20
Transmembranei609 – 629HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Structurei

3D structure databases

ProteinModelPortaliD7Y4V5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini89 – 296Cytochrom_C_asmInterPro annotationAdd BLAST208
Domaini316 – 630CcmF_CInterPro annotationAdd BLAST315

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

OMAiLILGGWT

Family and domain databases

InterProiView protein in InterPro
IPR032523 CcmF_C
IPR002541 Cyt_c_assembly
IPR003567 Cyt_c_biogenesis
IPR003568 Cyt_c_biogenesis_CcmF
PfamiView protein in Pfam
PF16327 CcmF_C, 1 hit
PF01578 Cytochrom_C_asm, 1 hit
PRINTSiPR01410 CCBIOGENESIS
PR01411 CCMFBIOGNSIS
TIGRFAMsiTIGR00353 nrfE, 1 hit

Sequencei

Sequence statusi: Complete.

D7Y4V5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMPEIGNGLL CLALGIALLL SVYPLWGVAR GDARMMASSR LFAWLLFMSV
60 70 80 90 100
AGAFLVLVNA FVVNDFTVTY VASNSNTQLP VWYRVAATWG AHEGSLLLWV
110 120 130 140 150
LLMSGWTFAV AIFSQRIPLD IVARVLAIMG MVSVGFLLFI LFTSNPFSRT
160 170 180 190 200
LPNFPIEGRD LNPLLQDPGL IFHPPLLYMG YVGFSVAFAF AIASLLSGRL
210 220 230 240 250
DSTYARFTRP WTLAAWIFLT LGIVLGSAWA YYELGWGGWW FWDPVENASF
260 270 280 290 300
MPWLVGTALM HSLAVTEQRA SFKAWTLLLA ISAFSLCLLG TFLVRSGVLV
310 320 330 340 350
SVHAFASDPA RGMFILAFMV LVIGGSLLLF AARGHKVRSR VNNALWSRES
360 370 380 390 400
LLLANNVLLV AAMLVVLLGT LLPLVHKQLG LGSISIGEPF FNTMFTWLMV
410 420 430 440 450
PFALLLGVGP LVRWGRDRPR KIRNLLIIAF ISTLVLSLLL PWLFESKVVA
460 470 480 490 500
MTVLGLAMAC WIAVLAIAEA ALRISRGTKT TFSYWGMVAA HLGLAVTIVG
510 520 530 540 550
IAFSQNYSVE RDVRMKSGDS VDIHEYRFTF RDVKEVTGPN WRGGVATIGV
560 570 580 590 600
TRDGKPETVL YAEKRYYNTA GSMMTEAAID GGITRDLYAA LGEELENGAW
610 620 630 640
AVRLYYKPFV RWIWAGGLMM ALGGLLCLFD PRYRKRVSPQ KTAPEAV
Length:647
Mass (Da):71,389
Last modified:October 5, 2010 - v1
Checksum:i162316A1ED156DA8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
ADTL01000203 Genomic DNA Translation: EFJ97319.1
RefSeqiWP_000982447.1, NZ_GG771813.1

Genome annotation databases

EnsemblBacteriaiEFJ97319; EFJ97319; HMPREF9540_02611

Entry informationi

Entry nameiD7Y4V5_ECOLX
AccessioniPrimary (citable) accession number: D7Y4V5
Entry historyiIntegrated into UniProtKB/TrEMBL: October 5, 2010
Last sequence update: October 5, 2010
Last modified: March 28, 2018
This is version 25 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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