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Protein

Pectinesterase

Gene

VIT_16s0013g00140

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: pectin degradation

This protein is involved in step 1 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.UniRule annotation
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Pectinesterase (VIT_19s0015g00150), Pectinesterase (VIT_03s0017g01950), Pectinesterase (VIT_10s0116g00590), Uncharacterized protein (VIT_14s0060g00390), Pectinesterase (VIT_15s0048g00510), Pectinesterase (VITISV_005088), Pectinesterase (VIT_07s0005g01940), Pectinesterase (VITISV_042228), Pectinesterase (VIT_16s0013g00140), Pectinesterase (VIT_06s0009g02600), Pectinesterase (VITISV_043176), Pectinesterase, Pectinesterase (VITISV_042494), Pectinesterase (VIT_02s0154g00600), Pectinesterase (VITISV_005130), Uncharacterized protein (VIT_14s0060g01950), Pectinesterase (VIT_16s0013g00160), Pectinesterase (VIT_12s0035g01900), Pectinesterase (VIT_05s0062g01160), Pectinesterase (VIT_11s0016g00300), Pectinesterase (VIT_01s0011g05380), Pectinesterase (VIT_06s0009g02590), Pectinesterase (VIT_13s0047g00230), Uncharacterized protein (VIT_04s0044g01030), Pectinesterase (VIT_11s0016g00510), Pectinesterase (VIT_07s0005g00720), Pectinesterase (VIT_16s0022g00700), Pectinesterase, Pectinesterase (VITISV_034303), Pectinesterase, Pectinesterase (VIT_07s0005g00730), Pectinesterase (VIT_14s0060g01960), Pectinesterase (VIT_09s0002g00330), Pectinesterase (VIT_05s0077g00890), Pectinesterase (VITISV_017689), Pectinesterase (VITISV_026596), Pectinesterase (VITISV_003251), Pectinesterase (VIT_16s0013g00180), Pectinesterase (VITISV_037092), Pectinesterase (VIT_15s0048g00500), Uncharacterized protein (VITISV_037760), Pectinesterase (VIT_13s0047g00240), Pectinesterase (VIT_16s0098g01900), Pectinesterase (VIT_14s0108g01170), Pectinesterase (VITISV_033375), Pectinesterase (VIT_16s0022g00710), Pectinesterase (VIT_11s0016g00290), Pectinesterase (VITISV_006029), Uncharacterized protein (VIT_07s0005g02750), Pectinesterase (VIT_05s0020g00800), Pectinesterase (VITISV_008223), Pectinesterase (VIT_11s0016g00480), Pectinesterase (VIT_16s0013g00190), Pectinesterase (VIT_05s0077g01950), Pectinesterase (VIT_11s0016g03020), Uncharacterized protein (VIT_04s0044g01000), Pectinesterase (VIT_11s0016g00330), Pectinesterase (VIT_11s0016g00310), Pectinesterase (VITISV_030725), Uncharacterized protein (VIT_06s0009g02570), Pectinesterase (VITISV_022717), Pectinesterase (VITISV_000562), Pectinesterase (VITISV_034766), Pectinesterase (VIT_06s0009g02560), Pectinesterase (VIT_09s0002g00320), Pectinesterase (VIT_01s0150g00230), Uncharacterized protein (VITISV_040170), Pectinesterase (VIT_05s0136g00310), Pectinesterase (VIT_04s0023g02980), Pectinesterase (VIT_06s0009g02630)
  2. Pectate lyase (VIT_14s0108g00030), Pectate lyase (PL1), Pectate lyase (Pel), Pectate lyase (VIT_08s0007g04820), Pectate lyase (VIT_17s0000g05740), Pectate lyase (VITISV_004934), Pectate lyase (VIT_17s0000g09810), Pectate lyase (VIT_01s0026g01680), Pectate lyase (VITISV_001795), Pectate lyase (VIT_19s0015g00510), Pectate lyase (VIT_10s0116g01160), Pectate lyase (VIT_01s0137g00240), Pectate lyase, Pectate lyase (VITISV_013694), Pectate lyase (VITISV_001007), Pectate lyase (VIT_16s0039g00260), Pectate lyase (VIT_00s0317g00150), Pectate lyase (VIT_14s0219g00230), Pectate lyase (VIT_05s0051g00590), Pectate lyase (VITISV_004734), Pectate lyase (VITISV_001006), Pectate lyase (VITISV_007917), Pectate lyase (VIT_08s0040g02740), Pectate lyase (Pel), Pectate lyase, Pectate lyase (VIT_07s0005g05520), Pectate lyase (VITISV_005608), Pectate lyase (VIT_13s0019g04910), Pectate lyase (VITISV_021245), Pectate lyase (VIT_01s0026g01670), Pectate lyase (VIT_13s0019g04900), Pectate lyase (VITISV_008675)
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Function’ section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei222PROSITE-ProRule annotation1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • aspartyl esterase activity Source: UniProtKB-UniRule
  • pectinesterase activity Source: GO_Central

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionAspartyl esteraseUniRule annotationSAAS annotation, Hydrolase

Enzyme and pathway databases

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00545;UER00823

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
PectinesteraseUniRule annotation (EC:3.1.1.11UniRule annotation)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:VIT_16s0013g00140Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiVitis vinifera (Grape)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri29760 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeViteaeVitis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000009183 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 16

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 24UniRule annotationAdd BLAST24
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500512709425 – 369PectinesteraseUniRule annotationAdd BLAST345

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
29760.VIT_16s0013g00140.t01

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini70 – 355PectinesteraseInterPro annotationAdd BLAST286

Keywords - Domaini

SignalUniRule annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IKXJ Eukaryota
COG4677 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000217409

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
D7U732

KEGG Orthology (KO)

More...
KOi
K01051

Identification of Orthologs from Complete Genome Data

More...
OMAi
PLYYEYN

Database of Orthologous Groups

More...
OrthoDBi
EOG09360CIN

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.160.20.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR033131 Pectinesterase_Asp_AS
IPR000070 Pectinesterase_cat

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01095 Pectinesterase, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51126 SSF51126, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00503 PECTINESTERASE_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D7U732-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATTMTSIAF FLLLLLLSLS AVLADNDNAQ IPSDKSQLAP WFRNSIQKYK
60 70 80 90 100
LRRTTLDPAL VEAEDSVKII KVSKSGGGNF NTVMAAVNSV PAGNTRRVII
110 120 130 140 150
WIGGGEYEEK IKIDRDKPFI TFYGSPEDMP KLSFDGTAAE FGTVDSATLI
160 170 180 190 200
VESDYFMAVN IIVINSSPRP DGKRKGAQAV ALRVSGDKAA FYNCRLIGFQ
210 220 230 240 250
DTLCDDRGRH FFHGCYVEGT VDYIFGSGKS LYLSTELHTK GDGGFSVITA
260 270 280 290 300
QARNLESEDN GYSFVHCTLS GTGGNTFLGR AWMSRPKVVF SYTFMSPVVS
310 320 330 340 350
PLGWSNNIHP ERESLVFYGE YKCMGPGADT SKRSKFTKEL DDDGATPFIT
360
LNYIDASTWL LPPPGLALR
Length:369
Mass (Da):40,472
Last modified:August 10, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i585CE8DB774BADCB
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
FN596738 Genomic DNA Translation: CBI38546.3

NCBI Reference Sequences

More...
RefSeqi
XP_002277202.1, XM_002277166.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
VIT_16s0013g00140.t01; VIT_16s0013g00140.t01; VIT_16s0013g00140

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
100266527

Gramene; a comparative resource for plants

More...
Gramenei
VIT_16s0013g00140.t01; VIT_16s0013g00140.t01; VIT_16s0013g00140

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
vvi:100266527

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN596738 Genomic DNA Translation: CBI38546.3
RefSeqiXP_002277202.1, XM_002277166.3

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

Protein-protein interaction databases

STRINGi29760.VIT_16s0013g00140.t01

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiVIT_16s0013g00140.t01; VIT_16s0013g00140.t01; VIT_16s0013g00140
GeneIDi100266527
GrameneiVIT_16s0013g00140.t01; VIT_16s0013g00140.t01; VIT_16s0013g00140
KEGGivvi:100266527

Phylogenomic databases

eggNOGiENOG410IKXJ Eukaryota
COG4677 LUCA
HOGENOMiHOG000217409
InParanoidiD7U732
KOiK01051
OMAiPLYYEYN
OrthoDBiEOG09360CIN

Enzyme and pathway databases

UniPathwayi
UPA00545;UER00823

Family and domain databases

Gene3Di2.160.20.10, 1 hit
InterProiView protein in InterPro
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR033131 Pectinesterase_Asp_AS
IPR000070 Pectinesterase_cat
PfamiView protein in Pfam
PF01095 Pectinesterase, 1 hit
SUPFAMiSSF51126 SSF51126, 1 hit
PROSITEiView protein in PROSITE
PS00503 PECTINESTERASE_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD7U732_VITVI
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D7U732
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: December 5, 2018
This is version 54 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
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