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Protein

Pectinesterase

Gene

VIT_16s0013g00140

Organism
Vitis vinifera (Grape)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

Catalytic activityi

Pectin + n H2O = n methanol + pectate.UniRule annotation

Pathwayi: pectin degradation

This protein is involved in step 1 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.UniRule annotation
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Pectinesterase (VIT_01s0150g00230), Pectinesterase (VIT_15s0048g00510), Pectinesterase (VIT_07s0005g00730), Pectinesterase (VIT_03s0017g01950), Pectinesterase (VIT_19s0015g00150), Pectinesterase (VIT_16s0013g00160), Pectinesterase, Pectinesterase (VITISV_042494), Uncharacterized protein (VIT_07s0005g02750), Pectinesterase (VIT_07s0005g01940), Pectinesterase (VIT_11s0016g03020), Pectinesterase (VITISV_037092), Pectinesterase (VIT_14s0060g01960), Pectinesterase (VITISV_030725), Pectinesterase (VITISV_034766), Pectinesterase (VITISV_017689), Pectinesterase (VIT_16s0013g00180), Pectinesterase, Pectinesterase (VIT_11s0016g00480), Pectinesterase (VIT_11s0016g00290), Pectinesterase, Pectinesterase (VIT_05s0077g00890), Pectinesterase (VIT_06s0009g02630), Pectinesterase (VIT_15s0048g00500), Pectinesterase (VIT_11s0016g00300), Uncharacterized protein (VIT_14s0060g00390), Pectinesterase (VITISV_034303), Pectinesterase (VITISV_008223), Pectinesterase (VIT_12s0035g01900), Uncharacterized protein (VITISV_040170), Pectinesterase (VIT_09s0002g00330), Pectinesterase (VIT_11s0016g00330), Pectinesterase (VITISV_022717), Pectinesterase (VITISV_005088), Pectinesterase (VIT_10s0116g00590), Pectinesterase (VIT_04s0023g02980), Pectinesterase (VIT_16s0013g00190), Pectinesterase (VIT_06s0009g02560), Pectinesterase (VIT_05s0136g00310), Uncharacterized protein (VIT_04s0044g01000), Uncharacterized protein (VITISV_037760), Pectinesterase (VIT_09s0002g00320), Pectinesterase (VIT_13s0047g00240), Pectinesterase (VIT_11s0016g00310), Pectinesterase (VIT_02s0154g00600), Pectinesterase (VIT_05s0062g01160), Pectinesterase (VIT_05s0077g01950), Pectinesterase (VIT_16s0098g01900), Pectinesterase (VIT_06s0009g02590), Pectinesterase (VITISV_006029), Pectinesterase (VIT_07s0005g00720), Pectinesterase (VITISV_003251), Pectinesterase (VIT_16s0022g00700), Pectinesterase (VITISV_026596), Pectinesterase (VIT_14s0108g01170), Pectinesterase (VIT_11s0016g00510), Uncharacterized protein (VIT_06s0009g02570), Pectinesterase (VITISV_000562), Uncharacterized protein (VIT_04s0044g01030), Pectinesterase (VITISV_005130), Pectinesterase (VITISV_033375), Pectinesterase (VIT_13s0047g00230), Pectinesterase (VIT_16s0022g00710), Pectinesterase (VIT_16s0013g00140), Pectinesterase (VITISV_042228), Uncharacterized protein (VIT_14s0060g01950), Pectinesterase (VIT_06s0009g02600), Pectinesterase (VIT_01s0011g05380), Pectinesterase (VITISV_043176), Pectinesterase (VIT_05s0020g00800)
  2. Pectate lyase (Pel), Pectate lyase (PL1), Pectate lyase (VIT_14s0108g00030), Pectate lyase (VIT_08s0007g04820), Pectate lyase (VIT_17s0000g05740), Pectate lyase (VITISV_001007), Pectate lyase (VITISV_013694), Pectate lyase (VIT_13s0019g04900), Pectate lyase (VIT_05s0051g00590), Pectate lyase (VIT_00s0317g00150), Pectate lyase (VITISV_001006), Pectate lyase (VIT_01s0026g01670), Pectate lyase (VITISV_007917), Pectate lyase (VITISV_021245), Pectate lyase (VIT_10s0116g01160), Pectate lyase (VITISV_004734), Pectate lyase (VITISV_004934), Pectate lyase (VITISV_008675), Pectate lyase (VITISV_001795), Pectate lyase (VIT_01s0026g01680), Pectate lyase (VIT_19s0015g00510), Pectate lyase (VIT_01s0137g00240), Pectate lyase, Pectate lyase (VIT_08s0040g02740), Pectate lyase, Pectate lyase (VIT_16s0039g00260), Pectate lyase (VIT_07s0005g05520), Pectate lyase (Pel), Pectate lyase (VITISV_005608), Pectate lyase (VIT_14s0219g00230), Pectate lyase (VIT_17s0000g09810), Pectate lyase (VIT_13s0019g04910)
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei222PROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionAspartyl esteraseUniRule annotationSAAS annotation, Hydrolase

Enzyme and pathway databases

UniPathwayi
UPA00545;UER00823

Names & Taxonomyi

Protein namesi
Recommended name:
PectinesteraseUniRule annotation (EC:3.1.1.11UniRule annotation)
Gene namesi
Ordered Locus Names:VIT_16s0013g00140Imported
OrganismiVitis vinifera (Grape)Imported
Taxonomic identifieri29760 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsVitalesVitaceaeVitis
Proteomesi
  • UP000009183 Componenti: Chromosome 16

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 24UniRule annotationAdd BLAST24
ChainiPRO_500512709425 – 369PectinesteraseUniRule annotationAdd BLAST345

Interactioni

Protein-protein interaction databases

STRINGi29760.VIT_16s0013g00140.t01

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini70 – 355PectinesteraseInterPro annotationAdd BLAST286

Keywords - Domaini

SignalUniRule annotation

Phylogenomic databases

eggNOGiENOG410IKXJ Eukaryota
COG4677 LUCA
HOGENOMiHOG000217409
InParanoidiD7U732
KOiK01051
OMAiPLYYEYN
OrthoDBiEOG09360CIN

Family and domain databases

Gene3Di2.160.20.10, 1 hit
InterProiView protein in InterPro
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR033131 Pectinesterase_Asp_AS
IPR000070 Pectinesterase_cat
PfamiView protein in Pfam
PF01095 Pectinesterase, 1 hit
SUPFAMiSSF51126 SSF51126, 1 hit
PROSITEiView protein in PROSITE
PS00503 PECTINESTERASE_2, 1 hit

Sequencei

Sequence statusi: Complete.

D7U732-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MATTMTSIAF FLLLLLLSLS AVLADNDNAQ IPSDKSQLAP WFRNSIQKYK
60 70 80 90 100
LRRTTLDPAL VEAEDSVKII KVSKSGGGNF NTVMAAVNSV PAGNTRRVII
110 120 130 140 150
WIGGGEYEEK IKIDRDKPFI TFYGSPEDMP KLSFDGTAAE FGTVDSATLI
160 170 180 190 200
VESDYFMAVN IIVINSSPRP DGKRKGAQAV ALRVSGDKAA FYNCRLIGFQ
210 220 230 240 250
DTLCDDRGRH FFHGCYVEGT VDYIFGSGKS LYLSTELHTK GDGGFSVITA
260 270 280 290 300
QARNLESEDN GYSFVHCTLS GTGGNTFLGR AWMSRPKVVF SYTFMSPVVS
310 320 330 340 350
PLGWSNNIHP ERESLVFYGE YKCMGPGADT SKRSKFTKEL DDDGATPFIT
360
LNYIDASTWL LPPPGLALR
Length:369
Mass (Da):40,472
Last modified:August 10, 2010 - v1
Checksum:i585CE8DB774BADCB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN596738 Genomic DNA Translation: CBI38546.3
RefSeqiXP_002277202.1, XM_002277166.3

Genome annotation databases

EnsemblPlantsiVIT_16s0013g00140.t01; VIT_16s0013g00140.t01; VIT_16s0013g00140
GeneIDi100266527
GrameneiVIT_16s0013g00140.t01; VIT_16s0013g00140.t01; VIT_16s0013g00140
KEGGivvi:100266527

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN596738 Genomic DNA Translation: CBI38546.3
RefSeqiXP_002277202.1, XM_002277166.3

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi29760.VIT_16s0013g00140.t01

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiVIT_16s0013g00140.t01; VIT_16s0013g00140.t01; VIT_16s0013g00140
GeneIDi100266527
GrameneiVIT_16s0013g00140.t01; VIT_16s0013g00140.t01; VIT_16s0013g00140
KEGGivvi:100266527

Phylogenomic databases

eggNOGiENOG410IKXJ Eukaryota
COG4677 LUCA
HOGENOMiHOG000217409
InParanoidiD7U732
KOiK01051
OMAiPLYYEYN
OrthoDBiEOG09360CIN

Enzyme and pathway databases

UniPathwayi
UPA00545;UER00823

Family and domain databases

Gene3Di2.160.20.10, 1 hit
InterProiView protein in InterPro
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR033131 Pectinesterase_Asp_AS
IPR000070 Pectinesterase_cat
PfamiView protein in Pfam
PF01095 Pectinesterase, 1 hit
SUPFAMiSSF51126 SSF51126, 1 hit
PROSITEiView protein in PROSITE
PS00503 PECTINESTERASE_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD7U732_VITVI
AccessioniPrimary (citable) accession number: D7U732
Entry historyiIntegrated into UniProtKB/TrEMBL: August 10, 2010
Last sequence update: August 10, 2010
Last modified: May 23, 2018
This is version 52 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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