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Entry version 58 (02 Jun 2021)
Sequence version 1 (13 Jul 2010)
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Protein
Submitted name:

Glycosyl hydrolase family 71

Gene

BXY_34140

Organism
Bacteroides xylanisolvens XB1A
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei46MannoseCombined sources1
Binding sitei63MannoseCombined sources1
Binding sitei156MannoseCombined sources1
Binding sitei289MannoseCombined sources1
Binding sitei295GlucoseCombined sources1
Binding sitei347Glucose; via carbonyl oxygenCombined sources1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolaseImported

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
BXYL657309:G1308-3132-MONOMER

BRENDA Comprehensive Enzyme Information System

More...
BRENDAi
3.2.1.130, 14033
3.2.1.198, 14033

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
GH99, Glycoside Hydrolase Family 99

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Glycosyl hydrolase family 71Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:BXY_34140Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBacteroides xylanisolvens XB1AImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri657309 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008795 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
657309.BXY_34140

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
D6D1V7

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni60 – 63Glucose bindingCombined sources4
Regioni195 – 198Mannose bindingCombined sources4
Regioni295 – 298Mannose bindingCombined sources4
Regioni333 – 336Glucose bindingCombined sources4
Regioni333 – 336Mannose bindingCombined sources4

Keywords - Domaini

Transmembrane, Transmembrane helixARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG3828, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_042710_1_0_10

Family and domain databases

Conserved Domains Database

More...
CDDi
cd11574, GH99, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR026071, Glyco_Hydrolase_99

The PANTHER Classification System

More...
PANTHERi
PTHR13572, PTHR13572, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF16317, Glyco_hydro_99, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D6D1V7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMIFFLSLSL ESCSKEDDNN PSNSENNGGN NNLGTELDYD TFCFYYDWYG
60 70 80 90 100
SEAIDGQYRH WAHAIAPDPN GGSGQNPGTI PGTQESIASN FYPQLGRYSS
110 120 130 140 150
SDPNILTKHM DMFVMARTGV LALTWWNEQD ETEAKRIGLI LDAADKKKIK
160 170 180 190 200
VCFHLEPYPS RNVQNLRENI VKLITRYGNH PAFYRKDGKP LFFIYDSYLI
210 220 230 240 250
EPSEWEKLLS PGGSITIRNT AYDALMIGLW TSSPTVQRPF ILNAHFDGFY
260 270 280 290 300
TYFAATGFTY GSTPTNWVSM QKWAKENGKI FIPSVGPGYI DTRIRPWNGS
310 320 330 340 350
VIRTRTDGQY YDAMYRKAIE AGVSAISITS FNEWHEGSQI EPAVPYTSSE
360 370 380
FTYLDYENRE PDYYLTRTAY WVGKFRESKQ
Length:380
Mass (Da):43,437
Last modified:July 13, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF6FBEF26DD95DD39
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
FP929033 Genomic DNA Translation: CBK68409.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CBK68409; CBK68409; BXY_34140

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bxy:BXY_34140

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|657309.4.peg.2259

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FP929033 Genomic DNA Translation: CBK68409.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4AD1X-ray1.90A1-380[»]
4AD2X-ray2.10A/B/C/D1-380[»]
4AD3X-ray2.00A/B/C/D1-380[»]
4AD4X-ray1.90A1-380[»]
4AD5X-ray1.90A1-380[»]
4UTFX-ray1.30A1-380[»]
4V27X-ray1.90A1-380[»]
4V28X-ray1.20A1-380[»]
5LYRX-ray1.14A17-380[»]
5M03X-ray1.05A17-380[»]
5M17X-ray1.03A17-380[»]
5M3WX-ray1.04A17-380[»]
5M5DX-ray1.07A17-380[»]
5MC8X-ray1.18A17-380[»]
5MELX-ray1.20A17-380[»]
6FAMX-ray1.13A17-380[»]
6FARX-ray1.30A17-380[»]
6FWGX-ray1.07A17-380[»]
6FWIX-ray1.25A17-380[»]
6FWJX-ray1.04A17-380[»]
6FWLX-ray1.12A17-380[»]
6FWMX-ray1.28A17-380[»]
6FWOX-ray1.34A17-380[»]
6FWPX-ray1.08A17-380[»]
6FWQX-ray1.65A17-380[»]
6HMGX-ray1.27A17-380[»]
6HMHX-ray1.03A17-380[»]
6ZJ6X-ray1.09AAA17-380[»]
SMRiD6D1V7
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

STRINGi657309.BXY_34140

Protein family/group databases

CAZyiGH99, Glycoside Hydrolase Family 99

Genome annotation databases

EnsemblBacteriaiCBK68409; CBK68409; BXY_34140
KEGGibxy:BXY_34140
PATRICifig|657309.4.peg.2259

Phylogenomic databases

eggNOGiCOG3828, Bacteria
HOGENOMiCLU_042710_1_0_10

Enzyme and pathway databases

BioCyciBXYL657309:G1308-3132-MONOMER
BRENDAi3.2.1.130, 14033
3.2.1.198, 14033

Family and domain databases

CDDicd11574, GH99, 1 hit
InterProiView protein in InterPro
IPR026071, Glyco_Hydrolase_99
PANTHERiPTHR13572, PTHR13572, 1 hit
PfamiView protein in Pfam
PF16317, Glyco_hydro_99, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD6D1V7_9BACE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D6D1V7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: June 2, 2021
This is version 58 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources
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