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Protein

Alanine racemase

Gene

LKI_04215

Organism
Leuconostoc kimchii (strain IMSNU 11154 / KCTC 2386 / IH25)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.UniRule annotation

Catalytic activityi

L-alanine = D-alanine.UniRule annotationSAAS annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotationSAAS annotation

Pathwayi: D-alanine biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes D-alanine from L-alanine.UniRule annotation
Proteins known to be involved in this subpathway in this organism are:
  1. Alanine racemase (LKI_04810), Alanine racemase (LKI_04215)
This subpathway is part of the pathway D-alanine biosynthesis, which is itself part of Amino-acid biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes D-alanine from L-alanine, the pathway D-alanine biosynthesis and in Amino-acid biosynthesis.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei39Proton acceptor; specific for D-alanineUniRule annotation1
Binding sitei136SubstrateUniRule annotation1
Active sitei265Proton acceptor; specific for L-alanineUniRule annotation1
Binding sitei312Substrate; via amide nitrogenUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomeraseUniRule annotationSAAS annotation
LigandPyridoxal phosphateUniRule annotationSAAS annotation

Enzyme and pathway databases

BioCyciLKIM762051:GJOL-851-MONOMER
UniPathwayiUPA00042; UER00497

Names & Taxonomyi

Protein namesi
Recommended name:
Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
Gene namesi
Ordered Locus Names:LKI_04215Imported
OrganismiLeuconostoc kimchii (strain IMSNU 11154 / KCTC 2386 / IH25)Imported
Taxonomic identifieri762051 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliLactobacillalesLeuconostocaceaeLeuconostoc
Proteomesi
  • UP000002362 Componenti: Chromosome

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei39N6-(pyridoxal phosphate)lysineUniRule annotation1

Interactioni

Protein-protein interaction databases

STRINGi762051.LKI_04215

Structurei

3D structure databases

ProteinModelPortaliD5T286
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini244 – 369Ala_racemase_CInterPro annotationAdd BLAST126

Sequence similaritiesi

Belongs to the alanine racemase family.UniRule annotationSAAS annotation

Phylogenomic databases

eggNOGiENOG4105CJ4 Bacteria
COG0787 LUCA
HOGENOMiHOG000031444
KOiK01775
OrthoDBiPOG091H022F

Family and domain databases

Gene3Di2.40.37.10, 1 hit
3.20.20.10, 1 hit
HAMAPiMF_01201 Ala_racemase, 1 hit
InterProiView protein in InterPro
IPR000821 Ala_racemase
IPR009006 Ala_racemase/Decarboxylase_C
IPR011079 Ala_racemase_C
IPR001608 Ala_racemase_N
IPR020622 Ala_racemase_pyridoxalP-BS
IPR029066 PLP-binding_barrel
PfamiView protein in Pfam
PF00842 Ala_racemase_C, 1 hit
PF01168 Ala_racemase_N, 1 hit
PRINTSiPR00992 ALARACEMASE
SMARTiView protein in SMART
SM01005 Ala_racemase_C, 1 hit
SUPFAMiSSF50621 SSF50621, 1 hit
SSF51419 SSF51419, 1 hit
TIGRFAMsiTIGR00492 alr, 1 hit
PROSITEiView protein in PROSITE
PS00395 ALANINE_RACEMASE, 1 hit

Sequencei

Sequence statusi: Complete.

D5T286-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVEAITRPTQ IEISKQALKH NTEVVKKTSG ADKIFLAVKS NAYGLGLIPT
60 70 80 90 100
SKAAVAGGVY GLAVAIIDEA LALRHERVTA PILILGISPA KYAELMAVQH
110 120 130 140 150
ILTTVVSLSW LKEAAQYLSG EQRLHVSLGV DTGMGRIGFR DRESLAEAIA
160 170 180 190 200
YLQENKQLFD YVGLATHFAE SDSSNNDYFY MQLKRWHDMT DGLPEPEFYH
210 220 230 240 250
VANSGAAMYH ADEVPHEVVR VGTVLYGVEP SRGELADGKN LQPVMALRSE
260 270 280 290 300
MNFVKLLPAG EGISYSHKYT TTGDEWIGTV PIGYGDGWLR KMTGFKVIVD
310 320 330 340 350
GHYAPIVGQV AMDQLMIRLP RQYPVGTKVT FIGKDGGLEN TIEDVAQHAG
360 370
LAPWEIMTGM QDRLHRVLVD
Length:370
Mass (Da):40,639
Last modified:July 13, 2010 - v1
Checksum:i97EC97843D63CA0A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001758 Genomic DNA Translation: ADG40385.1
RefSeqiWP_013102981.1, NC_014136.1

Genome annotation databases

EnsemblBacteriaiADG40385; ADG40385; LKI_04215
KEGGilki:LKI_04215
PATRICifig|762051.18.peg.851

Similar proteinsi

Entry informationi

Entry nameiD5T286_LEUKI
AccessioniPrimary (citable) accession number: D5T286
Entry historyiIntegrated into UniProtKB/TrEMBL: July 13, 2010
Last sequence update: July 13, 2010
Last modified: June 20, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteomeImported

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