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Entry version 42 (26 Feb 2020)
Sequence version 1 (18 May 2010)
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Protein
Submitted name:

RhsD

Gene

rhsD

Organism
Pantoea ananatis (strain LMG 20103)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
PANA706191:PANA_RS05520-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
RhsDImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rhsDImported
Ordered Locus Names:PANA_1076Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPantoea ananatis (strain LMG 20103)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri706191 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesErwiniaceaePantoea
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001702 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei20 – 43HelicalSequence analysisAdd BLAST24
Transmembranei50 – 69HelicalSequence analysisAdd BLAST20

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
706191.PANA_1076

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1328 – 1396Tox-HNH-EHHHInterPro annotationAdd BLAST69

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1377 – 1397DisorderedSequence analysisAdd BLAST21

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4105CNA Bacteria
COG3209 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001218_1_4_6

Identification of Orthologs from Complete Genome Data

More...
OMAi
LNYNRHR

Database of Orthologous Groups

More...
OrthoDBi
1639867at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008727 PAAR_motif
IPR001826 RHS
IPR022385 Rhs_assc_core
IPR031325 RHS_repeat
IPR028048 Tox-HNH-EHHH
IPR006530 YD

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05488 PAAR_motif, 1 hit
PF03527 RHS, 1 hit
PF05593 RHS_repeat, 3 hits
PF15657 Tox-HNH-EHHH, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR03696 Rhs_assc_core, 1 hit
TIGR01643 YD_repeat_2x, 5 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

D4GLX3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFEAARLGDD IGHSHALAGM IAGTIVGGLI AAAGGIAAGA LMIAGIGASC
60 70 80 90 100
LGVGVLLVGL SIGVGYLTGE LATAARDGIA DAGAASMTPK GKITTGSPNV
110 120 130 140 150
FINSKPAAMA TNSIVACKDD GPQQMAEGSS RVYINGLPAS RIDDRTTCDA
160 170 180 190 200
KVMTGSDNVY IGGEPEQTLP IQPEVPEWVY KASDLTLLFA GLAGGVGGAA
210 220 230 240 250
GKVGALGKLL SKIPGINKIA RVACRAGALM TGVAAAGILA RPVDIVSGQK
260 270 280 290 300
FLSGDDELDF VLPSRLPLRW QRYWRSGNPG DSVLGRGWNL FWETRLERYQ
310 320 330 340 350
DGLVWRAPSG DYVSFPLVPK GQRTYCEAEK HWLEHHRDDS WSLYDISGER
360 370 380 390 400
WHFMPLRDDA PSLPLCLTEP CGNEIQFDWN SDHTLAALTD SAGQRVTCRY
410 420 430 440 450
ANNRLAGAWL DDDICLVSYA YDDIGQLVTV TGRGGSVRRR FQWCDGLMVA
460 470 480 490 500
HEDMNGLLSE YRWQEIDGLP RVVAFRHSGG EQLDFEYDFD NGIRRARRDD
510 520 530 540 550
GVEAHWLIDD DDHVARFTDF DGRQTMLVYC AGELCDVIMP GGAMRCSNWD
560 570 580 590 600
RYGRMTQEID PVGRRTTYHW FRMTDRVIRT DYPDLSATQA AYDLNVRLLT
610 620 630 640 650
ETDALNNVTT YHYPDDTELL PDSITDATGG VVKLEWNRQG LLTQRTDCSG
660 670 680 690 700
SVTTFSYDRF GQLVRSVDAE GHVTQREWND KGQLCAIIHP DGSRETLHWN
710 720 730 740 750
TQGQLSAWRD PLETEVRWTY NALGLPVSLT DRIGRTRRWH YDARGNLLRL
760 770 780 790 800
ENGNGGDYRF TCDPLGRPLS EIRPDKTSRN MEWNARGFLI GLQENGQPAN
810 820 830 840 850
DGGIARRWQR FSYDDSGLIT QRTTQHAEYH YRRHRSGQLA SLVRTPTSDG
860 870 880 890 900
MALGIEDDEI AFTYDVAGQL LTEAGINGKL DYEWDALGNL THLTLPGEQQ
910 920 930 940 950
LAWLHYGSGH VSAIRFNQQL VSEFTRDRLH REIRRSQGAR EQARQYDSLG
960 970 980 990 1000
RRTMQRSELH SEVVLPEKAI LERAFRYSAR SELESVSDTL RGDIIYGYDD
1010 1020 1030 1040 1050
EGRLLKHYEA RQGHSTSHFT YDNADNLAAN DDALHALPVT DNRVHHWQNL
1060 1070 1080 1090 1100
FMKYDDWGNL VSRRSGLHEQ HFTYDAENRL ISAKGNGPDG GFTAHYHYDA
1110 1120 1130 1140 1150
LGRRTCKVVS TQHDRKEVRF LWQGYRLLQE QQDNGQCQTY VYDPNEAWSP
1160 1170 1180 1190 1200
LARIDHMAAG GRGDVLWFNT DINGAPLEVT DERGNIRWSG QYGSFGEVRR
1210 1220 1230 1240 1250
QTEGFTRLAK QSALPHQPLR YAGQYADSET GLHYNLFRYY DPQVGRFTVQ
1260 1270 1280 1290 1300
DPIGLEGGWN LYQYAPNPLS WVDPLGLSNC GAPNKKTSYE GISRRDAFRQ
1310 1320 1330 1340 1350
AKRDAGIPMN QHPSSITRPD LLDGSGKKIL DSTGQPIKTR QYEFVDKRGQ
1360 1370 1380 1390
SVFLQEHSLG HTKATSGHGA EPHFNLRPLD NLNTGSVPGT HGHYNFP
Length:1,397
Mass (Da):155,941
Last modified:May 18, 2010 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC60EBA33F1B5245A
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
CP001875 Genomic DNA Translation: ADD76243.1

NCBI Reference Sequences

More...
RefSeqi
WP_013024966.1, NC_013956.2

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ADD76243; ADD76243; PANA_1076

Database of genes from NCBI RefSeq genomes

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GeneIDi
31510019

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pam:PANA_1076

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001875 Genomic DNA Translation: ADD76243.1
RefSeqiWP_013024966.1, NC_013956.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi706191.PANA_1076

Genome annotation databases

EnsemblBacteriaiADD76243; ADD76243; PANA_1076
GeneIDi31510019
KEGGipam:PANA_1076

Phylogenomic databases

eggNOGiENOG4105CNA Bacteria
COG3209 LUCA
HOGENOMiCLU_001218_1_4_6
OMAiLNYNRHR
OrthoDBi1639867at2

Enzyme and pathway databases

BioCyciPANA706191:PANA_RS05520-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR008727 PAAR_motif
IPR001826 RHS
IPR022385 Rhs_assc_core
IPR031325 RHS_repeat
IPR028048 Tox-HNH-EHHH
IPR006530 YD
PfamiView protein in Pfam
PF05488 PAAR_motif, 1 hit
PF03527 RHS, 1 hit
PF05593 RHS_repeat, 3 hits
PF15657 Tox-HNH-EHHH, 1 hit
TIGRFAMsiTIGR03696 Rhs_assc_core, 1 hit
TIGR01643 YD_repeat_2x, 5 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiD4GLX3_PANAM
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: D4GLX3
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 18, 2010
Last sequence update: May 18, 2010
Last modified: February 26, 2020
This is version 42 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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