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Protein
Submitted name:

Upstream transcription factor family member 3

Gene

Usf3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Upstream transcription factor family member 3Imported
Gene namesi
Name:Usf3Imported
Synonyms:RGD1560175Imported, RGD1560175_predictedImported
ORF Names:rCG_52907Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 11

Organism-specific databases

RGDi1560175 Usf3

PTM / Processingi

Proteomic databases

PRIDEiD4ABR5

Expressioni

Gene expression databases

BgeeiENSRNOG00000027756 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000040722

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 69BHLHInterPro annotationAdd BLAST52

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili12 – 32Sequence analysisAdd BLAST21
Coiled coili82 – 109Sequence analysisAdd BLAST28

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IK0Z Eukaryota
ENOG410Y31K LUCA
GeneTreeiENSGT00390000015759
InParanoidiD4ABR5
OMAiNTNVALN
OrthoDBiEOG091G005Z
TreeFamiTF332661

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit

Sequencei

Sequence statusi: Complete.

D4ABR5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPEMTEHETP TKKQHRKKNR ETHNAVERHR KKKINAGINR IGELIPCSPA
60 70 80 90 100
LKQSKNMILD QAFKYITELK RQNDELLLNG GSSEQAEEIK KLRKQLEEIQ
110 120 130 140 150
KENGRYIELL KANDICLYDD PTIHWKGNLK TSKVSVVIPS DQVQKNIIVY
160 170 180 190 200
SNGSQPGGNS QGTAVQGITF NVGHGLQKQT ANVVPVQRTC KLVTPVSISG
210 220 230 240 250
IYPSENKPWH QTTVSALAAN QSVPLCLPTA ISAQNILELS TSESQSSALG
260 270 280 290 300
ATGGSVVTTS VGPDPHQHRS LNTCLNDQNA SENSNVQESP KSSKKTVSSV
310 320 330 340 350
SGTSSSNSAA APGVHHETKS SLATQGSSAD SQNTLVSITT PVSSQPPRST
360 370 380 390 400
GSSSPVSVSK TVDPTNTAAA VVPAHTAVSK SALPVSSLSA TPLEGGWTLS
410 420 430 440 450
CSLPSSSVSA SELKNINSLT RISSAGNTQT TWTTLHLAGN TIQPLSQPPS
460 470 480 490 500
SASTPALNEC GTSPTPSNHK HMATGITFNN SPPTDGQPVE QIVVTLPSCP
510 520 530 540 550
PLPMQPLIAQ PQVKSQPPKN ILPLNSAMQV IQMAQPVGSG VTAAPANQNV
560 570 580 590 600
IILQPPSTTP CPAMMRAEVS NQAVGQQIVI IQAANQNPLP LLSAPHPGPV
610 620 630 640 650
RLPVNGASAI IGSHNSVQNV PAPQTFGGKH LVHILPRPSS LSTSNSAQTF
660 670 680 690 700
SVTMSNQQQP QTISLNGQLF ALQPVMSSSG TTNQSPMQII QPTTSEDPNT
710 720 730 740 750
NVALNTFGAL ASLNQSISQM AGQSCVQLSI SQSANPQTSA NSQTSPTNCV
760 770 780 790 800
SLTTVAPTMT AENSATQSTT YSLATASSTN TVTCLPSTMK SKRLSKKPSA
810 820 830 840 850
KKHLAANKPA CPLNSVRDVG KMDGPGMDSS AEPSCSDGLL NGLPVGLSSV
860 870 880 890 900
TVSQAKSVSI SASHSLDILN SESVIPESDS KSKSAEDCSS SSRESEANEQ
910 920 930 940 950
LALATAKSKD STPILQESSQ GTPPCSVALP NATKSCASAN VLTPSPTESE
960 970 980 990 1000
SLVSQVSGMP STTSTSNTVC ISEVEIVAEP CPVQQESLDT MQAAGPLKGQ
1010 1020 1030 1040 1050
GLTMLLSDLA KEKDLQRTSL PVQMDHPDFS PESSKIGDPN VDLHPKQELL
1060 1070 1080 1090 1100
LTSDDRDLPQ PHSCLPDQEV IHGSLLTSRQ ADSPMSTSSG SSRSFSVASM
1110 1120 1130 1140 1150
LPETAREDVT SSTTNTCDSC TFAEQTDIVA LAARAILDQE SIEKGRLGTQ
1160 1170 1180 1190 1200
ADLKDVTPKP SETSLEGDQP FKPQIHKETC TGQADPTPNE FNSQDSVEVT
1210 1220 1230 1240 1250
VDRPLEKPSC SLGIKASNPP LQVSASQPPS LTHQNSISRP LVSCAGLSQS
1260 1270 1280 1290 1300
SDQTAIPVTV NMTVASSAYG SQPPVPPLMT EYSQEQLNSM ANSIPNPQVQ
1310 1320 1330 1340 1350
EPLSKPSHES RKDSAKRTVQ DDLLLSSAKR QKHCQPAPLR LESVPLMSRT
1360 1370 1380 1390 1400
PDNIPDQTQM MASQITPNSS NSVVPVSNPA HGDGLTRLFP AGNNFAAPVL
1410 1420 1430 1440 1450
RQADVQCNPQ PSVAEQPQQT QAGQHLQALQ QHVPPQGVSH LHTNHLYLKQ
1460 1470 1480 1490 1500
QQQQQQAGQL RERHHLYQLQ HHVPHADNAV HSQPHIVHQQ RTLQQEVQMQ
1510 1520 1530 1540 1550
KKRNLVQGTP TSQLSLQPKH HGTDQSRPKS SQPHPHHQQM QQQLQQHFAS
1560 1570 1580 1590 1600
SQPEKSCENP SSSRGHHSHP QNHLNQDVLH QQQDVGSRQQ GSAVSSDHVS
1610 1620 1630 1640 1650
GHNPMQRLLP SRGLEQQMVS QPSIVTRSSD MTCAPHRPER NRVSSYSAEA
1660 1670 1680 1690 1700
LIGKSSSTSE QRLGISIQGS RVSDQLEMRS YLDVPRNKSL ALHNMQGRMD
1710 1720 1730 1740 1750
HTVTSDIRLS DCQTFKPGAA SQQPQSNFEV QSSRNNEIGN PAPSLRGMQS
1760 1770 1780 1790 1800
QAFRISQNTG PPPIDRQKRL SYPPVQSIPT GNAVPPRDSE NTCHQSFMQS
1810 1820 1830 1840 1850
LLAPHLGDQV IGSQRSLSEH PRNTQCGPSS TIEYNCPPAR ESVHIRRESE
1860 1870 1880 1890 1900
SQNRESCDMS LGAINPRNST LNIPFSSSSS SGDIQGRNTS PNVSVQKSNP
1910 1920 1930 1940 1950
MRITDSHGAK GHMNPPVTSN MHGVARPTLP HPSVSHGNAD QGPPVRQANS
1960 1970 1980 1990 2000
SVAQRSRHPL QDSSGSKIRQ PERNRSGNQR HSNVFDPSLP HLPLSTSGSM
2010 2020 2030 2040 2050
ILGRQQPAAE KRGSIVRFMP DSPQVPNDNS GPDQHSLSQN FGFPFIPEGG
2060 2070 2080 2090 2100
MNPPINANTS FIPQVTQPSA TRAPALIPVD PQNTLPSFYP PYSPAHPTLS
2110 2120 2130 2140 2150
NDISIPYFSN QMFSNPSTEK VNSGSLNNRF GSILSPPRPV GFAQPSFPLL
2160 2170 2180 2190 2200
PEMPPMHMAN SHLSNFNMTS LFPEIAALPD GSAMSPLLTI ANSSASDSSK
2210 2220
QSSNRPAHNI SHILGHDCSS AV
Length:2,222
Mass (Da):237,378
Last modified:July 22, 2015 - v3
Checksum:i8A5D2ABACBBAFA56
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07034272 Genomic DNA No translation available.
AABR07034273 Genomic DNA No translation available.
AABR07034274 Genomic DNA No translation available.
CH473967 Genomic DNA Translation: EDM11165.1
CH473967 Genomic DNA Translation: EDM11166.1
RefSeqiXP_001067438.2, XM_001067438.6
XP_006221202.1, XM_006221140.3
XP_006221203.1, XM_006221141.3
XP_006248418.1, XM_006248356.2
XP_006248419.1, XM_006248357.2
XP_221454.5, XM_221454.8

Genome annotation databases

EnsembliENSRNOT00000046208; ENSRNOP00000040722; ENSRNOG00000027756
ENSRNOT00000093249; ENSRNOP00000076256; ENSRNOG00000027756
GeneIDi303946
KEGGirno:303946
UCSCiRGD:1560175 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07034272 Genomic DNA No translation available.
AABR07034273 Genomic DNA No translation available.
AABR07034274 Genomic DNA No translation available.
CH473967 Genomic DNA Translation: EDM11165.1
CH473967 Genomic DNA Translation: EDM11166.1
RefSeqiXP_001067438.2, XM_001067438.6
XP_006221202.1, XM_006221140.3
XP_006221203.1, XM_006221141.3
XP_006248418.1, XM_006248356.2
XP_006248419.1, XM_006248357.2
XP_221454.5, XM_221454.8

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000040722

Proteomic databases

PRIDEiD4ABR5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000046208; ENSRNOP00000040722; ENSRNOG00000027756
ENSRNOT00000093249; ENSRNOP00000076256; ENSRNOG00000027756
GeneIDi303946
KEGGirno:303946
UCSCiRGD:1560175 rat

Organism-specific databases

CTDi205717
RGDi1560175 Usf3

Phylogenomic databases

eggNOGiENOG410IK0Z Eukaryota
ENOG410Y31K LUCA
GeneTreeiENSGT00390000015759
InParanoidiD4ABR5
OMAiNTNVALN
OrthoDBiEOG091G005Z
TreeFamiTF332661

Gene expression databases

BgeeiENSRNOG00000027756 Expressed in 9 organ(s), highest expression level in skeletal muscle tissue

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD4ABR5_RAT
AccessioniPrimary (citable) accession number: D4ABR5
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: July 22, 2015
Last modified: November 7, 2018
This is version 71 of the entry and version 3 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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