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Protein
Submitted name:

Atonal bHLH transcription factor 8

Gene

Atoh8

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Atonal bHLH transcription factor 8Imported
Submitted name:
Similar to bHLH factor Math6 (Predicted)Imported
Gene namesi
Name:Atoh8Imported
Synonyms:RGD1561512_predictedImported
ORF Names:rCG_56155Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 4

Organism-specific databases

RGDi1561512 Atoh8

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD4AA26

Expressioni

Gene expression databases

BgeeiENSRNOG00000010716 Expressed in 9 organ(s), highest expression level in testis

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000014277

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini231 – 283BHLHInterPro annotationAdd BLAST53

Phylogenomic databases

eggNOGiENOG410IQ4D Eukaryota
ENOG4111P2D LUCA
GeneTreeiENSGT00680000099860
KOiK09084
OMAiETQPFRE
OrthoDBiEOG091G167Y
TreeFamiTF324848

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR032660 ATOH8
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
PANTHERiPTHR19290:SF102 PTHR19290:SF102, 1 hit
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit

Sequencei

Sequence statusi: Complete.

D4AA26-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKHIPVLEDG PWKTVCVKEL NGLKKLKRKG KEPVRRANGY KTFRLDLEAP
60 70 80 90 100
EFGATASATA ATNGLRDRTQ PFPIATPVPA SVAPAVPPGG GTDTAREFRG
110 120 130 140 150
IRAPEVSDAR KRGFALGTVG PGLPTPPPPP ASQSLAPGDP EVQPLREQAL
160 170 180 190 200
RPRILLCAPP ARPTPSAPLA PPAVPQESPV RPAPPTRPGE SSYSSISHVI
210 220 230 240 250
YNNHPDSSAS PRKRPGEATA ASTEIKALQQ TRRLLANARE RTRVHTISAA
260 270 280 290 300
FEALRKQVPC YSYGQKLSKL AILRIACNYI LSLARLADLD YSADHSNLSF
310 320
SECVQRCTRT LQAEGRAKKR KE
Length:322
Mass (Da):34,753
Last modified:April 20, 2010 - v1
Checksum:i47B4189164AC09FD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC133017 Genomic DNA No translation available.
CH473957 Genomic DNA Translation: EDL91017.1
RefSeqiNP_001102711.1, NM_001109241.1
UniGeneiRn.18505

Genome annotation databases

EnsembliENSRNOT00000014277; ENSRNOP00000014277; ENSRNOG00000010716
GeneIDi500200
KEGGirno:500200
UCSCiRGD:1561512 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC133017 Genomic DNA No translation available.
CH473957 Genomic DNA Translation: EDL91017.1
RefSeqiNP_001102711.1, NM_001109241.1
UniGeneiRn.18505

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000014277

Proteomic databases

PRIDEiD4AA26

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000014277; ENSRNOP00000014277; ENSRNOG00000010716
GeneIDi500200
KEGGirno:500200
UCSCiRGD:1561512 rat

Organism-specific databases

CTDi84913
RGDi1561512 Atoh8

Phylogenomic databases

eggNOGiENOG410IQ4D Eukaryota
ENOG4111P2D LUCA
GeneTreeiENSGT00680000099860
KOiK09084
OMAiETQPFRE
OrthoDBiEOG091G167Y
TreeFamiTF324848

Gene expression databases

BgeeiENSRNOG00000010716 Expressed in 9 organ(s), highest expression level in testis

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR032660 ATOH8
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
PANTHERiPTHR19290:SF102 PTHR19290:SF102, 1 hit
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD4AA26_RAT
AccessioniPrimary (citable) accession number: D4AA26
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 63 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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