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Protein
Submitted name:

Scratch family transcriptional repressor 1

Gene

Scrt1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Scratch family transcriptional repressor 1Imported
Submitted name:
Scratch homolog 1, zinc finger protein (Drosophila) (Predicted)Imported
Gene namesi
Name:Scrt1Imported
Synonyms:Scrt1_predictedImported
ORF Names:rCG_59387Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1306236 Scrt1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD4A919

Expressioni

Gene expression databases

BgeeiENSRNOG00000025594 Expressed in 3 organ(s), highest expression level in brain

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000030637

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini191 – 218C2H2-typeInterPro annotationAdd BLAST28
Domaini248 – 275C2H2-typeInterPro annotationAdd BLAST28
Domaini276 – 303C2H2-typeInterPro annotationAdd BLAST28
Domaini304 – 322C2H2-typeInterPro annotationAdd BLAST19

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG2462 Eukaryota
ENOG41106JS LUCA
GeneTreeiENSGT00390000011027
KOiK09219
OMAiAFFIMDG
OrthoDBiEOG091G0Q0V
TreeFamiTF315515

Family and domain databases

InterProiView protein in InterPro
IPR029794 SCRATCH1/2
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PANTHERiPTHR44270 PTHR44270, 1 hit
PfamiView protein in Pfam
PF00096 zf-C2H2, 4 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 3 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits

Sequencei

Sequence statusi: Complete.

D4A919-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPRSFLVKKV KLDTFSSADL DSSYGRARSD LGVRLQDKGY LSDYVGPASV
60 70 80 90 100
YDGDAEAALL KGPSPEPMYA AAVRGELGPA ASGSAPPPTP RPELATAAGG
110 120 130 140 150
YINGDAAVSE GYAADAFFIT DGRSRRKAAN ANAASAPSTA SVAAPDSDAG
160 170 180 190 200
GGGGPGTRGS GSGSASRGGT RVGAGTEARA GPGATGAGGR HACGECGKTY
210 220 230 240 250
ATSSNLSRHK QTHRSLDSQL ARRCPTCGKV YVSMPAMAMH LLTHDLRHKC
260 270 280 290 300
GVCGKAFSRP WLLQGHMRSH TGEKPFGCAH CGKAFADRSN LRAHMQTHSA
310 320 330 340
FKHFQCKRCK KSFALKSYLN KHYESACFKG GASGPATPAP PQLSPVQA
Length:348
Mass (Da):35,945
Last modified:April 20, 2010 - v1
Checksum:iB44A339197B3E2A0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC139605 Genomic DNA No translation available.
CH473950 Genomic DNA Translation: EDM15967.1
RefSeqiNP_001124042.1, NM_001130570.1
UniGeneiRn.220523

Genome annotation databases

EnsembliENSRNOT00000035423; ENSRNOP00000030637; ENSRNOG00000025594
GeneIDi366951
KEGGirno:366951
UCSCiRGD:1306236 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC139605 Genomic DNA No translation available.
CH473950 Genomic DNA Translation: EDM15967.1
RefSeqiNP_001124042.1, NM_001130570.1
UniGeneiRn.220523

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000030637

Proteomic databases

PRIDEiD4A919

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000035423; ENSRNOP00000030637; ENSRNOG00000025594
GeneIDi366951
KEGGirno:366951
UCSCiRGD:1306236 rat

Organism-specific databases

CTDi83482
RGDi1306236 Scrt1

Phylogenomic databases

eggNOGiKOG2462 Eukaryota
ENOG41106JS LUCA
GeneTreeiENSGT00390000011027
KOiK09219
OMAiAFFIMDG
OrthoDBiEOG091G0Q0V
TreeFamiTF315515

Miscellaneous databases

PROiPR:D4A919

Gene expression databases

BgeeiENSRNOG00000025594 Expressed in 3 organ(s), highest expression level in brain

Family and domain databases

InterProiView protein in InterPro
IPR029794 SCRATCH1/2
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PANTHERiPTHR44270 PTHR44270, 1 hit
PfamiView protein in Pfam
PF00096 zf-C2H2, 4 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 3 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiD4A919_RAT
AccessioniPrimary (citable) accession number: D4A919
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 64 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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