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Protein
Submitted name:

Stomatin-like 1

Gene

Stoml1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Names & Taxonomyi

Protein namesi
Submitted name:
Stomatin-like 1Imported
Gene namesi
Name:Stoml1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 8

Organism-specific databases

RGDi1559463 Stoml1

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei58 – 79HelicalSequence analysisAdd BLAST22

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiD4A7E9
PRIDEiD4A7E9

Expressioni

Gene expression databases

BgeeiENSRNOG00000008530 Expressed in 9 organ(s), highest expression level in brain
GenevisibleiD4A7E9 RN

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000011383

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini77 – 237PHBInterPro annotationAdd BLAST161

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG2621 Eukaryota
KOG4170 Eukaryota
COG0330 LUCA
GeneTreeiENSGT00550000074454
InParanoidiD4A7E9
OMAiQSIYFLD
OrthoDBiEOG091G0974
PhylomeDBiD4A7E9
TreeFamiTF105750

Family and domain databases

Gene3Di3.30.1050.10, 1 hit
InterProiView protein in InterPro
IPR001107 Band_7
IPR036013 Band_7/SPFH_dom_sf
IPR003033 SCP2_sterol-bd_dom
IPR036527 SCP2_sterol-bd_dom_sf
IPR028517 SLP1
IPR001972 Stomatin_fam
PANTHERiPTHR10264:SF89 PTHR10264:SF89, 1 hit
PfamiView protein in Pfam
PF01145 Band_7, 1 hit
PF02036 SCP2, 1 hit
PRINTSiPR00721 STOMATIN
SMARTiView protein in SMART
SM00244 PHB, 1 hit
SUPFAMiSSF117892 SSF117892, 1 hit
SSF55718 SSF55718, 1 hit

Sequencei

Sequence statusi: Complete.

D4A7E9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLGRSGYRAL PLGDFDRFQQ SSFGFLGSQK GCLSPEPGGV GPGADAPESW
60 70 80 90 100
PSCLCHGLIS FLGFLLLLLT FPISGWFALK IVPTYERMIV FRLGRIRNPQ
110 120 130 140 150
GPGMVLLLPF IDSFQRVDLR TRAFNVPPCK LASKDGAVLS VGADVQFRIW
160 170 180 190 200
DPVLSVMAVK DLNAATRMTA HNAMTKALLR RPLQEIQMEK LKIGDQLLLE
210 220 230 240 250
INDVTRAWGL EVDRVELAVE AVLQPPQDSL AVPSLDSTLQ QLALHFLGGS
260 270 280 290 300
MTSVGRVPSP GSDTLEMINE VEPPASRAGA GTEPSPKQPV AEGLLTALQP
310 320 330 340 350
FLSESLVSQV GACYQFNVLL PSGTQSIYFL DLTTGQGRVG HGVPDGIPDV
360 370 380 390
VVEMAEADLQ ALLCKELRPL GAYMSGRLKV KGDLAVVMKL EAVLKALK
Length:398
Mass (Da):42,913
Last modified:April 20, 2010 - v1
Checksum:i70D1AA4464A80B06
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07070274 Genomic DNA No translation available.
RefSeqiNP_001292167.1, NM_001305238.1

Genome annotation databases

EnsembliENSRNOT00000011383; ENSRNOP00000011383; ENSRNOG00000008530
GeneIDi300748
KEGGirno:300748
UCSCiRGD:1559463 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07070274 Genomic DNA No translation available.
RefSeqiNP_001292167.1, NM_001305238.1

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000011383

Proteomic databases

PaxDbiD4A7E9
PRIDEiD4A7E9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000011383; ENSRNOP00000011383; ENSRNOG00000008530
GeneIDi300748
KEGGirno:300748
UCSCiRGD:1559463 rat

Organism-specific databases

CTDi9399
RGDi1559463 Stoml1

Phylogenomic databases

eggNOGiKOG2621 Eukaryota
KOG4170 Eukaryota
COG0330 LUCA
GeneTreeiENSGT00550000074454
InParanoidiD4A7E9
OMAiQSIYFLD
OrthoDBiEOG091G0974
PhylomeDBiD4A7E9
TreeFamiTF105750

Gene expression databases

BgeeiENSRNOG00000008530 Expressed in 9 organ(s), highest expression level in brain
GenevisibleiD4A7E9 RN

Family and domain databases

Gene3Di3.30.1050.10, 1 hit
InterProiView protein in InterPro
IPR001107 Band_7
IPR036013 Band_7/SPFH_dom_sf
IPR003033 SCP2_sterol-bd_dom
IPR036527 SCP2_sterol-bd_dom_sf
IPR028517 SLP1
IPR001972 Stomatin_fam
PANTHERiPTHR10264:SF89 PTHR10264:SF89, 1 hit
PfamiView protein in Pfam
PF01145 Band_7, 1 hit
PF02036 SCP2, 1 hit
PRINTSiPR00721 STOMATIN
SMARTiView protein in SMART
SM00244 PHB, 1 hit
SUPFAMiSSF117892 SSF117892, 1 hit
SSF55718 SSF55718, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD4A7E9_RAT
AccessioniPrimary (citable) accession number: D4A7E9
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 61 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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