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Protein
Submitted name:

PDZ domain-containing 3

Gene

Pdzd3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
PDZ domain-containing 3Imported
Gene namesi
Name:Pdzd3Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 8

Organism-specific databases

RGDi1559807 Pdzd3

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiD4A7C5
PRIDEiD4A7C5

Expressioni

Gene expression databases

BgeeiENSRNOG00000008526 Expressed in 8 organ(s), highest expression level in adult mammalian kidney
GenevisibleiD4A7C5 RN

Interactioni

GO - Molecular functioni

Structurei

3D structure databases

ProteinModelPortaliD4A7C5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini49 – 130PDZInterPro annotationAdd BLAST82
Domaini157 – 235PDZInterPro annotationAdd BLAST79
Domaini263 – 346PDZInterPro annotationAdd BLAST84
Domaini394 – 475PDZInterPro annotationAdd BLAST82

Phylogenomic databases

eggNOGiENOG410ITA7 Eukaryota
ENOG410XURS LUCA
GeneTreeiENSGT00530000062999
InParanoidiD4A7C5
OMAiCHVVKDE
OrthoDBiEOG091G0KAL
PhylomeDBiD4A7C5
TreeFamiTF350449

Family and domain databases

InterProiView protein in InterPro
IPR031200 NHERF-4
IPR001478 PDZ
IPR036034 PDZ_sf
PANTHERiPTHR14191:SF20 PTHR14191:SF20, 1 hit
PfamiView protein in Pfam
PF00595 PDZ, 3 hits
SMARTiView protein in SMART
SM00228 PDZ, 4 hits
SUPFAMiSSF50156 SSF50156, 4 hits
PROSITEiView protein in PROSITE
PS50106 PDZ, 4 hits

Sequencei

Sequence statusi: Complete.

D4A7C5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEAAADLRDT ALLTLKFKFN PRLGIDNPVL SLAEDQDQSD PWNLHRPRFC
60 70 80 90 100
LLSKEEEKSF GFHLQQQLGK ADHVVCRVDP GSSAQRQGLR EGDRILAVNN
110 120 130 140 150
NIVEHEDYAV VVRYIRASGP RVLLTVLAQH VYDVTRAQQG NEAFPCPTLA
160 170 180 190 200
SGVRPRLCHV VKDEGGFGFS VTHGARGPFW LVLSAGGAAE RAGVPPGARL
210 220 230 240 250
LEVNGICVEK FTYNQLNRKL CQSGDRVTLL VAGPEVEEQC HQLGMPLAAP
260 270 280 290 300
LAEGWALPAK PRCLNIEKGP QGFGFLLREE KGPDGRLGQF LWEVDPGLPA
310 320 330 340 350
DKAGMKAGDR LVAVAGESMD GLGHEETVSR IRAQGSCVSL VVVDPEADRF
360 370 380 390 400
FSMVRLSPLL FLENTEIAAA PLAETKDLPV EDTVEPSGLA GSRQCFLYPG
410 420 430 440 450
PGGGYGFRLR CVASGPCLFI SQVTPGGSAA RAGLQMGDAI LEVNGCPVGG
460 470 480 490
DSDLDTLQQL AEAEPPLRLK LAPRNSQGSE AWISLESGED WPLASELL
Length:498
Mass (Da):53,594
Last modified:April 20, 2010 - v1
Checksum:i2AD4601EA4375356
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112557 Genomic DNA No translation available.
RefSeqiNP_001178925.1, NM_001191996.1
UniGeneiRn.54119

Genome annotation databases

EnsembliENSRNOT00000011582; ENSRNOP00000011582; ENSRNOG00000008526
GeneIDi500986
KEGGirno:500986
UCSCiRGD:1559807 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112557 Genomic DNA No translation available.
RefSeqiNP_001178925.1, NM_001191996.1
UniGeneiRn.54119

3D structure databases

ProteinModelPortaliD4A7C5
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiD4A7C5
PRIDEiD4A7C5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000011582; ENSRNOP00000011582; ENSRNOG00000008526
GeneIDi500986
KEGGirno:500986
UCSCiRGD:1559807 rat

Organism-specific databases

CTDi79849
RGDi1559807 Pdzd3

Phylogenomic databases

eggNOGiENOG410ITA7 Eukaryota
ENOG410XURS LUCA
GeneTreeiENSGT00530000062999
InParanoidiD4A7C5
OMAiCHVVKDE
OrthoDBiEOG091G0KAL
PhylomeDBiD4A7C5
TreeFamiTF350449

Gene expression databases

BgeeiENSRNOG00000008526 Expressed in 8 organ(s), highest expression level in adult mammalian kidney
GenevisibleiD4A7C5 RN

Family and domain databases

InterProiView protein in InterPro
IPR031200 NHERF-4
IPR001478 PDZ
IPR036034 PDZ_sf
PANTHERiPTHR14191:SF20 PTHR14191:SF20, 1 hit
PfamiView protein in Pfam
PF00595 PDZ, 3 hits
SMARTiView protein in SMART
SM00228 PDZ, 4 hits
SUPFAMiSSF50156 SSF50156, 4 hits
PROSITEiView protein in PROSITE
PS50106 PDZ, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiD4A7C5_RAT
AccessioniPrimary (citable) accession number: D4A7C5
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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