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Protein
Submitted name:

Zic family member 4

Gene

Zic4

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Zic family member 4Imported
Gene namesi
Name:Zic4Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 8

Organism-specific databases

RGDi1307298 Zic4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiD4A6Z4
PRIDEiD4A6Z4

Expressioni

Gene expression databases

BgeeiENSRNOG00000014871 Expressed in 2 organ(s), highest expression level in brain
ExpressionAtlasiD4A6Z4 baseline and differential

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000019938

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini168 – 195C2H2-typeInterPro annotationAdd BLAST28
Domaini196 – 225C2H2-typeInterPro annotationAdd BLAST30
Domaini226 – 255C2H2-typeInterPro annotationAdd BLAST30
Domaini256 – 285C2H2-typeInterPro annotationAdd BLAST30

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00900000140802
InParanoidiD4A6Z4
OMAiPSSDFGR
OrthoDBiEOG091G0M59

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 2 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

D4A6Z4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MRKRLRLYRN TLKESSSSCG HHGPQLAAAS NPSVFPGLHE QPPQASHSRP
60 70 80 90 100
LNGLLRLGIP GDMYARSEPF APGPMARGDT LATATALHGY GGMNLTMNLT
110 120 130 140 150
APHGPGAFFR YMRQPIKQEL ICKWLGDDSP ISPRPCSKTF STMHELVTHV
160 170 180 190 200
TVEHVGGPEQ ANHICFWEEC PRQGKPFKAK YKLVNHIRVH TGEKPFPCPF
210 220 230 240 250
PGCGKVFARS ENLKIHKRTH TGEKPFRCEF EGCERRFANS SDRKKHSHVH
260 270 280 290 300
TSDKPYMCKV RGCDKCYTHP SSLRKHMKVH GRSPPPSSGY DSAITSALTS
310 320
TSLESGREPS VACSAAVVVR GTDVSE
Length:326
Mass (Da):36,032
Last modified:July 22, 2015 - v3
Checksum:i44F76A2BA20AF3FA
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
D3ZMJ5D3ZMJ5_RAT
Zic family member 4
Zic4 Zic4_predicted, rCG_25168
74Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07071064 Genomic DNA No translation available.
AABR07071065 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSRNOT00000019938; ENSRNOP00000019938; ENSRNOG00000014871
UCSCiRGD:1307298 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07071064 Genomic DNA No translation available.
AABR07071065 Genomic DNA No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000019938

Proteomic databases

PaxDbiD4A6Z4
PRIDEiD4A6Z4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000019938; ENSRNOP00000019938; ENSRNOG00000014871
UCSCiRGD:1307298 rat

Organism-specific databases

RGDi1307298 Zic4

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00900000140802
InParanoidiD4A6Z4
OMAiPSSDFGR
OrthoDBiEOG091G0M59

Gene expression databases

BgeeiENSRNOG00000014871 Expressed in 2 organ(s), highest expression level in brain
ExpressionAtlasiD4A6Z4 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 2 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiD4A6Z4_RAT
AccessioniPrimary (citable) accession number: D4A6Z4
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: July 22, 2015
Last modified: November 7, 2018
This is version 55 of the entry and version 3 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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