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Protein
Submitted name:

Mitsugumin 29 (Predicted)

Gene

Sypl2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Mitsugumin 29 (Predicted)Imported
Submitted name:
Mitsugumin29Imported
Submitted name:
Synaptophysin-like 2Imported
Gene namesi
Name:Sypl2Imported
Synonyms:Mg29Imported, Mg29_predictedImported
ORF Names:rCG_29102Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1309907 Sypl2

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei117 – 139HelicalSequence analysisAdd BLAST23
Transmembranei151 – 171HelicalSequence analysisAdd BLAST21
Transmembranei214 – 234HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000019780 Expressed in 7 organ(s), highest expression level in skeletal muscle tissue

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026883

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini30 – 238MARVELInterPro annotationAdd BLAST209

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiENOG410IF8N Eukaryota
ENOG4111ZDM LUCA
GeneTreeiENSGT00390000010039
OMAiNRVQYEM
OrthoDBiEOG091G0ZEI
TreeFamiTF315804

Family and domain databases

InterProiView protein in InterPro
IPR008253 Marvel
IPR001285 Synaptophysin/porin
PANTHERiPTHR10306 PTHR10306, 1 hit
PfamiView protein in Pfam
PF01284 MARVEL, 1 hit
PRINTSiPR00220 SYNAPTOPHYSN
PROSITEiView protein in PROSITE
PS51225 MARVEL, 1 hit

Sequencei

Sequence statusi: Complete.

D4A6M0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSTESPGRT SDKSPRQQVD RLLLGLRWQR LEEPLGFIKV LQWLFAIFAF
60 70 80 90 100
GSCGSYSGET GALVRCNNDP KDVSSIIVLF GYPFRLYQVQ YEMPLCDEES
110 120 130 140 150
TSKTMNLMGD FSAPAEFFVT LGIFSFFYTM AALVIYLRFH KVYTENKRFP
160 170 180 190 200
LVDFCVTVSF TFFWLVAAAA WGKGLTDVKG ATRPSSLTAA MSVCHGEEAV
210 220 230 240 250
CSAGATPSMG LANISVLFGF INFFLWAGNC WFVFKETPWH GQGQDQGQGP
260
SQESAAEQGA VEKQ
Length:264
Mass (Da):29,280
Last modified:April 20, 2010 - v1
Checksum:i4D2665B21DB48604
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC121208 Genomic DNA No translation available.
AB158471 mRNA Translation: BAM08465.1
CH473952 Genomic DNA Translation: EDL81925.1
RefSeqiNP_001102033.1, NM_001108563.1
UniGeneiRn.6456

Genome annotation databases

EnsembliENSRNOT00000026883; ENSRNOP00000026883; ENSRNOG00000019780
GeneIDi362018
KEGGirno:362018

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC121208 Genomic DNA No translation available.
AB158471 mRNA Translation: BAM08465.1
CH473952 Genomic DNA Translation: EDL81925.1
RefSeqiNP_001102033.1, NM_001108563.1
UniGeneiRn.6456

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026883

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000026883; ENSRNOP00000026883; ENSRNOG00000019780
GeneIDi362018
KEGGirno:362018

Organism-specific databases

CTDi284612
RGDi1309907 Sypl2

Phylogenomic databases

eggNOGiENOG410IF8N Eukaryota
ENOG4111ZDM LUCA
GeneTreeiENSGT00390000010039
OMAiNRVQYEM
OrthoDBiEOG091G0ZEI
TreeFamiTF315804

Gene expression databases

BgeeiENSRNOG00000019780 Expressed in 7 organ(s), highest expression level in skeletal muscle tissue

Family and domain databases

InterProiView protein in InterPro
IPR008253 Marvel
IPR001285 Synaptophysin/porin
PANTHERiPTHR10306 PTHR10306, 1 hit
PfamiView protein in Pfam
PF01284 MARVEL, 1 hit
PRINTSiPR00220 SYNAPTOPHYSN
PROSITEiView protein in PROSITE
PS51225 MARVEL, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD4A6M0_RAT
AccessioniPrimary (citable) accession number: D4A6M0
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 12, 2018
This is version 63 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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