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Protein
Submitted name:

Spermatogenesis and oogenesis-specific basic helix-loop-helix 1

Gene

Sohlh1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Spermatogenesis and oogenesis-specific basic helix-loop-helix 1Imported
Gene namesi
Name:Sohlh1Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi1564440 Sohlh1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiD4A4L1
PRIDEiD4A4L1

Expressioni

Gene expression databases

BgeeiENSRNOG00000033983 Expressed in 2 organ(s), highest expression level in testis

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000042351

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini54 – 105BHLHInterPro annotationAdd BLAST52

Phylogenomic databases

eggNOGiENOG410J1JP Eukaryota
ENOG4111AXY LUCA
GeneTreeiENSGT00390000000656
InParanoidiD4A4L1
KOiK22495
OMAiGALSCCE
OrthoDBiEOG091G0V6C
TreeFamiTF336841

Family and domain databases

Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR032668 SOHLH1
PANTHERiPTHR16223:SF14 PTHR16223:SF14, 1 hit
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit

Sequencei

Sequence statusi: Complete.

D4A4L1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASGGHERAT EDYGVSDITG CSKTPQTETQ ENLETPSQSS ALCPAPVAAA
60 70 80 90 100
NWSPCLRRNV VSERERRRRI SLSCERLRAL LPQFDGRRED MASVLEMSVC
110 120 130 140 150
FLQLAHSMDP SWEQLSVPQP PQEMWHMWQG DVLQVTLANQ IADSKPDSGI
160 170 180 190 200
AKASAVARVQ DPPCCGMLDT DQSQATERAS ELLERPSSCP GKSQSSLSFS
210 220 230 240 250
ESESSSLGAG LPPWPPHSWQ PATPEASDAV SGGSQQVGSL AGDTESPGML
260 270 280 290 300
AEEANLVLAS VPDARYTTGA GSEVVDGASF LLTTNPDWWL GSVEGRGGPA
310 320 330 340 350
LARNSPVDGA EPIYIGDPEP CSQELQAGPV ELWGLDFGSP GLALKDEADS

IFPDFFP
Length:357
Mass (Da):38,026
Last modified:April 3, 2013 - v2
Checksum:i45878172FA3261D9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07051248 Genomic DNA No translation available.
RefSeqiNP_001178781.1, NM_001191852.1
UniGeneiRn.43879

Genome annotation databases

EnsembliENSRNOT00000051729; ENSRNOP00000042351; ENSRNOG00000033983
GeneIDi362085
KEGGirno:362085
UCSCiRGD:1564440 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07051248 Genomic DNA No translation available.
RefSeqiNP_001178781.1, NM_001191852.1
UniGeneiRn.43879

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000042351

Proteomic databases

PaxDbiD4A4L1
PRIDEiD4A4L1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000051729; ENSRNOP00000042351; ENSRNOG00000033983
GeneIDi362085
KEGGirno:362085
UCSCiRGD:1564440 rat

Organism-specific databases

CTDi402381
RGDi1564440 Sohlh1

Phylogenomic databases

eggNOGiENOG410J1JP Eukaryota
ENOG4111AXY LUCA
GeneTreeiENSGT00390000000656
InParanoidiD4A4L1
KOiK22495
OMAiGALSCCE
OrthoDBiEOG091G0V6C
TreeFamiTF336841

Gene expression databases

BgeeiENSRNOG00000033983 Expressed in 2 organ(s), highest expression level in testis

Family and domain databases

Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR032668 SOHLH1
PANTHERiPTHR16223:SF14 PTHR16223:SF14, 1 hit
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD4A4L1_RAT
AccessioniPrimary (citable) accession number: D4A4L1
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: November 7, 2018
This is version 60 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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