UniProtKB - D4A0U3 (D4A0U3_RAT)
Protein
Submitted name:
Zinc finger protein 638
Gene
Zfp638
Organism
Rattus norvegicus (Rat)
Status
Functioni
GO - Molecular functioni
- RNA binding Source: UniProtKB-UniRule
- zinc ion binding Source: InterPro
GO - Biological processi
- RNA splicing Source: InterPro
Keywordsi
Molecular function | RNA-bindingPROSITE-ProRule annotation |
Names & Taxonomyi
Protein namesi | Submitted name: Zinc finger protein 638ImportedSubmitted name: Zinc finger, matrin-like (Predicted), isoform CRA_aImported |
Gene namesi | ORF Names:rCG_56422Imported |
Organismi | Rattus norvegicus (Rat)Imported |
Taxonomic identifieri | 10116 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus |
Proteomesi |
|
Organism-specific databases
RGDi | 1309746, Zfp638 |
Subcellular locationi
Nucleus
- nucleoplasm Source: Ensembl
- nucleus Source: GO_Central
Keywords - Cellular componenti
NucleusARBA annotationExpressioni
Gene expression databases
Bgeei | ENSRNOG00000014501, Expressed in Ammon's horn and 21 other tissues |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 630 – 700 | RRMInterPro annotationAdd BLAST | 71 | |
Domaini | 1825 – 1855 | Matrin-typeInterPro annotationAdd BLAST | 31 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 138 | DisorderedSequence analysisAdd BLAST | 138 | |
Regioni | 314 – 335 | DisorderedSequence analysisAdd BLAST | 22 | |
Regioni | 350 – 373 | DisorderedSequence analysisAdd BLAST | 24 | |
Regioni | 483 – 623 | DisorderedSequence analysisAdd BLAST | 141 | |
Regioni | 812 – 832 | DisorderedSequence analysisAdd BLAST | 21 | |
Regioni | 1034 – 1100 | DisorderedSequence analysisAdd BLAST | 67 | |
Regioni | 1239 – 1264 | DisorderedSequence analysisAdd BLAST | 26 | |
Regioni | 1336 – 1370 | DisorderedSequence analysisAdd BLAST | 35 | |
Regioni | 1388 – 1411 | DisorderedSequence analysisAdd BLAST | 24 | |
Regioni | 1433 – 1476 | DisorderedSequence analysisAdd BLAST | 44 | |
Regioni | 1499 – 1534 | DisorderedSequence analysisAdd BLAST | 36 | |
Regioni | 1714 – 1766 | DisorderedSequence analysisAdd BLAST | 53 | |
Regioni | 1846 – 1875 | DisorderedSequence analysisAdd BLAST | 30 |
Coiled coil
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Coiled coili | 1684 – 1704 | Sequence analysisAdd BLAST | 21 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 15 – 34 | Pro-richSequence analysisAdd BLAST | 20 | |
Compositional biasi | 63 – 77 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 78 – 112 | PolyampholyteSequence analysisAdd BLAST | 35 | |
Compositional biasi | 115 – 138 | PolarSequence analysisAdd BLAST | 24 | |
Compositional biasi | 483 – 507 | BasicSequence analysisAdd BLAST | 25 | |
Compositional biasi | 512 – 538 | PolyampholyteSequence analysisAdd BLAST | 27 | |
Compositional biasi | 564 – 586 | PolarSequence analysisAdd BLAST | 23 | |
Compositional biasi | 587 – 606 | PolyampholyteSequence analysisAdd BLAST | 20 | |
Compositional biasi | 1035 – 1055 | PolyampholyteSequence analysisAdd BLAST | 21 | |
Compositional biasi | 1056 – 1089 | PolarSequence analysisAdd BLAST | 34 | |
Compositional biasi | 1336 – 1368 | PolarSequence analysisAdd BLAST | 33 | |
Compositional biasi | 1392 – 1411 | PolarSequence analysisAdd BLAST | 20 | |
Compositional biasi | 1433 – 1449 | PolyampholyteSequence analysisAdd BLAST | 17 | |
Compositional biasi | 1453 – 1467 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 1506 – 1534 | PolyampholyteSequence analysisAdd BLAST | 29 |
Keywords - Domaini
Coiled coilSequence analysisPhylogenomic databases
eggNOGi | ENOG502QVQ7, Eukaryota |
GeneTreei | ENSGT00940000153322 |
HOGENOMi | CLU_002180_0_0_1 |
OMAi | STMKRDD |
OrthoDBi | 301913at2759 |
Family and domain databases
Gene3Di | 3.30.70.330, 3 hits |
InterProi | View protein in InterPro IPR000690, Matrin/U1-C_Znf_C2H2 IPR003604, Matrin/U1-like-C_Znf_C2H2 IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR000504, RRM_dom IPR033096, ZNF638 IPR036236, Znf_C2H2_sf IPR013087, Znf_C2H2_type |
PANTHERi | PTHR15592:SF1, PTHR15592:SF1, 2 hits |
SMARTi | View protein in SMART SM00360, RRM, 2 hits SM00355, ZnF_C2H2, 2 hits SM00451, ZnF_U1, 2 hits |
SUPFAMi | SSF54928, SSF54928, 3 hits SSF57667, SSF57667, 1 hit |
PROSITEi | View protein in PROSITE PS50102, RRM, 1 hit PS50171, ZF_MATRIN, 1 hit PS00028, ZINC_FINGER_C2H2_1, 1 hit |
i Sequence
Sequence statusi: Complete.
D4A0U3-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MSRPRFNPRG TFPLQRPRAP NPPGMRPPGP FVRPGSMGLP RFYPAGRARG
60 70 80 90 100
IPHRFPGHGS YQNMGPQRMN VQVTQHRTDP RLTKEKLDFP EAQQKKGKPH
110 120 130 140 150
GSRWDDEPHI TPPVEVKQSS VTQVTEQSPK VQSRYTKESA SSILASFGLS
160 170 180 190 200
NEDLEELSRY PDEQLTPENM PLILRDIRMR KMGRRLPNLP SHSRNKETLS
210 220 230 240 250
NETVSSNVID YGHASKYGYT EDPLEVRIYD PEIPTDEVKN EFQSQQSISA
260 270 280 290 300
TVSTPNVICN SVFPGEDVFR QMDFPGESSS QSFFPVESGT KMSGLHISGQ
310 320 330 340 350
SVLEPVKSIS QSISQTVSQT TSQSLNRPSM NQPPFSSELI SALSQQERIP
360 370 380 390 400
QKSVISSADT HGGPRGSKKS YQTEADLPIR SPFGIVKASW LPKFTQAGAQ
410 420 430 440 450
KMKRLPTPSM MNDYYAASPR IFPHLCSLCN VECSHLKDWI QHQNTSTHIE
460 470 480 490 500
SCRQLRQQYP DWNPEILPSR RSRSPRICHR FISKYRSRSR SRSRSRSPYR
510 520 530 540 550
SRNLIRRSPK SYRSVSPERT SRRSVRSDRK KALEDGGQRS IHGTEVTKQK
560 570 580 590 600
HIEAVDKGLS PAQKPKLTSG TKPSAKSISS VKSDSHLGGH SAHKSKNLED
610 620 630 640 650
DTLPEGKQVS GKGALVQRKP RKDQSLSSNS ILLVSELPED GFTEEDIRKA
660 670 680 690 700
FQPFGKISDV LLVPCRNEAY LEMEFKKAVT SIMKYIETMP LVIKGKSVKV
710 720 730 740 750
CVPGKKKPQN KEMKKKPLDL KKSASALKKE TDASKVIENV TSASSAKSGQ
760 770 780 790 800
IKSSTVKVNK SAGKSAGSVK SVVTVAAKGK ASIKTAKSGK KSLEAKKSGN
810 820 830 840 850
IKNKDYNKPV TVSANSEVKA SREDKATGKT AVETTSGALE ATENEPVSKE
860 870 880 890 900
MEEMSVVFIS NLPNKGYSTE EIYNLAKPFG ALKDILVLSS HKKAYIEINK
910 920 930 940 950
KSADSMVKFY TCFPICMDGN QLSISMAPED VDLKDEEALF TTLIQESDPE
960 970 980 990 1000
ANIDEIYNRF VHLDNLPEDG LQCVLCVGHQ FGKVDRYVFM SNRNKVILQL
1010 1020 1030 1040 1050
ESPESALSMY NFLKQNPQNI GDHVLSCTLS PKMDSEVQKK NDPELGKESP
1060 1070 1080 1090 1100
DLKNSPVDES EVQTAADSPS VKPSEVEEET TSNIGTEPSV HQEELGKEEP
1110 1120 1130 1140 1150
KQALCESDFA IQTLELEAQG AEVSIEIPLV ASTPANIELF SENIDESALK
1160 1170 1180 1190 1200
QQMYASDFEK EEAEVTNLET ELPGSDSVFI EERNIKGILE ESPSETEDIF
1210 1220 1230 1240 1250
SGSAQPMVEA IAEVDKHETV SEVLPSACIV TQVQGGYEDE KSVSKKDITE
1260 1270 1280 1290 1300
KGSVDEKKEN EFSTTGTRMD LQMKMEKAEE SEANIFAEKL EKIIAAIREK
1310 1320 1330 1340 1350
PIESAVIKAD PAKGVEQSSK PDETGKTSVL TVSSVYSSKS SIKATVVSSP
1360 1370 1380 1390 1400
KAKSTPSKTE SQNIFPKPVL REQINAEKKV SAKEFGLLKN TRSGLAESNS
1410 1420 1430 1440 1450
KSKPTQIGVN RGCSGRISAL QCKDSKVDYK DITKQSQETE TKPPIMKRDD
1460 1470 1480 1490 1500
SNNKALALQN TKNSKSTTDR SSKSKEEPLF TFNLDEFVTV DEVIEEVNPS
1510 1520 1530 1540 1550
QAKQNPLKGK RKEALKISPS PELNLKKKKG KTSVPHSVEG ELSFVTLDEI
1560 1570 1580 1590 1600
GEEEDSTAQA LVTVDEVIDE EELNMEEMVK NSNSLLTLDE LIDQDDCIPH
1610 1620 1630 1640 1650
SGPKDVTVLS MAEERDLQQE RLVTVDEIGE VEESADITFA TLNAKRDKRD
1660 1670 1680 1690 1700
SIGFISSQMP EDPSTLVTVD EIQDDSSDFH LMTLDEVTEE DEDSLADFNN
1710 1720 1730 1740 1750
LKEELNFVTV DEVGDEEDGD NDSKVELAQG KIDHRTDKKG TRKRRAVDPK
1760 1770 1780 1790 1800
KTKLDPFSQV GPGSETVTQK DLKTMTERHL AVDEAELKDL EPDEKRRKIE
1810 1820 1830 1840 1850
DSSIGKSVTS DVSGDLDFLV PKAGFFCPIC SLFYSGEKAM ANHCKSTRHK
1860 1870
QNTEKFMAKQ RKEKEQNETE ERSSR
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AABR07061308 Genomic DNA No translation available. AABR07061309 Genomic DNA No translation available. AABR07061310 Genomic DNA No translation available. CH473957 Genomic DNA Translation: EDL91171.1 |
RefSeqi | NP_001101338.1, NM_001107868.1 |
Genome annotation databases
Ensembli | ENSRNOT00000019617; ENSRNOP00000019617; ENSRNOG00000014501 |
GeneIDi | 312491 |
KEGGi | rno:312491 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AABR07061308 Genomic DNA No translation available. AABR07061309 Genomic DNA No translation available. AABR07061310 Genomic DNA No translation available. CH473957 Genomic DNA Translation: EDL91171.1 |
RefSeqi | NP_001101338.1, NM_001107868.1 |
3D structure databases
SMRi | D4A0U3 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 10116.ENSRNOP00000019617 |
Proteomic databases
PRIDEi | D4A0U3 |
Genome annotation databases
Ensembli | ENSRNOT00000019617; ENSRNOP00000019617; ENSRNOG00000014501 |
GeneIDi | 312491 |
KEGGi | rno:312491 |
Organism-specific databases
CTDi | 18139 |
RGDi | 1309746, Zfp638 |
Phylogenomic databases
eggNOGi | ENOG502QVQ7, Eukaryota |
GeneTreei | ENSGT00940000153322 |
HOGENOMi | CLU_002180_0_0_1 |
OMAi | STMKRDD |
OrthoDBi | 301913at2759 |
Gene expression databases
Bgeei | ENSRNOG00000014501, Expressed in Ammon's horn and 21 other tissues |
Family and domain databases
Gene3Di | 3.30.70.330, 3 hits |
InterProi | View protein in InterPro IPR000690, Matrin/U1-C_Znf_C2H2 IPR003604, Matrin/U1-like-C_Znf_C2H2 IPR012677, Nucleotide-bd_a/b_plait_sf IPR035979, RBD_domain_sf IPR000504, RRM_dom IPR033096, ZNF638 IPR036236, Znf_C2H2_sf IPR013087, Znf_C2H2_type |
PANTHERi | PTHR15592:SF1, PTHR15592:SF1, 2 hits |
SMARTi | View protein in SMART SM00360, RRM, 2 hits SM00355, ZnF_C2H2, 2 hits SM00451, ZnF_U1, 2 hits |
SUPFAMi | SSF54928, SSF54928, 3 hits SSF57667, SSF57667, 1 hit |
PROSITEi | View protein in PROSITE PS50102, RRM, 1 hit PS50171, ZF_MATRIN, 1 hit PS00028, ZINC_FINGER_C2H2_1, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | D4A0U3_RAT | |
Accessioni | D4A0U3Primary (citable) accession number: D4A0U3 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | April 20, 2010 |
Last sequence update: | April 20, 2010 | |
Last modified: | February 10, 2021 | |
This is version 83 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |