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Protein
Submitted name:

Aly/REF export factor

Gene

Alyref

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Aly/REF export factorImported
Submitted name:
RCG32827, isoform CRA_aImported
Gene namesi
Name:AlyrefImported
Synonyms:Thoc4Imported
ORF Names:rCG_32827Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1594679 Alyref

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD3ZXH7

Expressioni

Gene expression databases

BgeeiENSRNOG00000036687 Expressed in 10 organ(s), highest expression level in colon

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000051838

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini106 – 176RRMInterPro annotationAdd BLAST71

Phylogenomic databases

eggNOGiKOG0533 Eukaryota
ENOG4111JAW LUCA
GeneTreeiENSGT00410000025615
KOiK12881
OMAiFSNRVGN
OrthoDBiEOG091G0T4Z

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit

Sequencei

Sequence statusi: Complete.

D3ZXH7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MADKMDMSLD DIIKLNRSQR GGRGGGRGRG RAGSQGGRGG AVQAAARVNR
60 70 80 90 100
GGGPMRNRPA IARGAAGGGG RNRPAPYSRP KQLPDKWQHD LFDSGFGGGA
110 120 130 140 150
GVETGGKLLV SNLDFGVSDA DIQELFAEFG TLKKAAVHYD RSGRSLGTAD
160 170 180
VHFERKADAL KAMKQYNGVP LDASYIPPLL DLLPEDSLL
Length:189
Mass (Da):19,915
Last modified:April 20, 2010 - v1
Checksum:i88D11C32D5BC00CE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC131537 Genomic DNA No translation available.
CH473948 Genomic DNA Translation: EDM06861.1
RefSeqiNP_001103072.1, NM_001109602.1
UniGeneiRn.6994

Genome annotation databases

EnsembliENSRNOT00000054955; ENSRNOP00000051838; ENSRNOG00000036687
GeneIDi690585
KEGGirno:690585

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC131537 Genomic DNA No translation available.
CH473948 Genomic DNA Translation: EDM06861.1
RefSeqiNP_001103072.1, NM_001109602.1
UniGeneiRn.6994

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000051838

Proteomic databases

PRIDEiD3ZXH7

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000054955; ENSRNOP00000051838; ENSRNOG00000036687
GeneIDi690585
KEGGirno:690585

Organism-specific databases

CTDi10189
RGDi1594679 Alyref

Phylogenomic databases

eggNOGiKOG0533 Eukaryota
ENOG4111JAW LUCA
GeneTreeiENSGT00410000025615
KOiK12881
OMAiFSNRVGN
OrthoDBiEOG091G0T4Z

Gene expression databases

BgeeiENSRNOG00000036687 Expressed in 10 organ(s), highest expression level in colon

Family and domain databases

Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 1 hit
SMARTiView protein in SMART
SM00360 RRM, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50102 RRM, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZXH7_RAT
AccessioniPrimary (citable) accession number: D3ZXH7
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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