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Protein

Colipase-like protein 2

Gene

Clpsl2

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Colipase-like protein 2
Gene namesi
Name:Clpsl2
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 20

Organism-specific databases

RGDi1592336 Clpsl2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19By similarityAdd BLAST19
ChainiPRO_000041669120 – 104Colipase-like protein 2Add BLAST85

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi38 ↔ 49PROSITE-ProRule annotation
Disulfide bondi44 ↔ 60PROSITE-ProRule annotation
Disulfide bondi48 ↔ 82PROSITE-ProRule annotation
Disulfide bondi70 ↔ 90PROSITE-ProRule annotation
Disulfide bondi84 ↔ 101PROSITE-ProRule annotation

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiD3ZVN1

Expressioni

Gene expression databases

BgeeiENSRNOG00000038807 Expressed in 3 organ(s), highest expression level in testis
ExpressionAtlasiD3ZVN1 differential

Structurei

3D structure databases

SMRiD3ZVN1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the colipase family.PROSITE-ProRule annotation

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG410JFYG Eukaryota
ENOG411160Z LUCA
GeneTreeiENSGT00390000011494
InParanoidiD3ZVN1
OMAiMICLPQT
OrthoDBiEOG091G0Z2E
PhylomeDBiD3ZVN1
TreeFamiTF343049

Family and domain databases

InterProiView protein in InterPro
IPR001981 Colipase
PANTHERiPTHR10041 PTHR10041, 1 hit
PfamiView protein in Pfam
PF15083 Colipase-like, 1 hit
PROSITEiView protein in PROSITE
PS51342 COLIPASE_2, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

D3ZVN1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAFTQALVTV LAFLVGTLPH KFDFSENSDL KKANGDKCVH HSQCFSDCCL
60 70 80 90 100
IDLERSGAFC TSKSHVGMAC LPQTKRSLNI LCPCRIGLSC HSKDPMCPRR

CQMI
Length:104
Mass (Da):11,495
Last modified:April 20, 2010 - v1
Checksum:i2C516012819F0601
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0U1RRU9A0A0U1RRU9_RAT
Colipase-like protein 2
Clpsl2
72Annotation score:
A0A0U1RRW7A0A0U1RRW7_RAT
Colipase-like protein 2
Clpsl2
20Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR03116945 Genomic DNA No translation available.
RefSeqiNP_001128474.1, NM_001135002.1
UniGeneiRn.220925

Genome annotation databases

EnsembliENSRNOT00000059292; ENSRNOP00000056057; ENSRNOG00000038807
GeneIDi689425
KEGGirno:689425
UCSCiRGD:1592336 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR03116945 Genomic DNA No translation available.
RefSeqiNP_001128474.1, NM_001135002.1
UniGeneiRn.220925

3D structure databases

SMRiD3ZVN1
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiD3ZVN1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000059292; ENSRNOP00000056057; ENSRNOG00000038807
GeneIDi689425
KEGGirno:689425
UCSCiRGD:1592336 rat

Organism-specific databases

CTDi389383
RGDi1592336 Clpsl2

Phylogenomic databases

eggNOGiENOG410JFYG Eukaryota
ENOG411160Z LUCA
GeneTreeiENSGT00390000011494
InParanoidiD3ZVN1
OMAiMICLPQT
OrthoDBiEOG091G0Z2E
PhylomeDBiD3ZVN1
TreeFamiTF343049

Miscellaneous databases

PROiPR:D3ZVN1

Gene expression databases

BgeeiENSRNOG00000038807 Expressed in 3 organ(s), highest expression level in testis
ExpressionAtlasiD3ZVN1 differential

Family and domain databases

InterProiView protein in InterPro
IPR001981 Colipase
PANTHERiPTHR10041 PTHR10041, 1 hit
PfamiView protein in Pfam
PF15083 Colipase-like, 1 hit
PROSITEiView protein in PROSITE
PS51342 COLIPASE_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiCOLL2_RAT
AccessioniPrimary (citable) accession number: D3ZVN1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 18, 2012
Last sequence update: April 20, 2010
Last modified: September 12, 2018
This is version 44 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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