UniProtKB - D3ZVH5 (D3ZVH5_RAT)
Protein
E3 ubiquitin-protein ligase Mdm2
Gene
Mdm2
Organism
Rattus norvegicus (Rat)
Status
Functioni
Catalytic activityi
- S-ubiquitinyl-[E2 ubiquitin-conjugating enzyme]-L-cysteine + [acceptor protein]-L-lysine = [E2 ubiquitin-conjugating enzyme]-L-cysteine + N(6)-ubiquitinyl-[acceptor protein]-L-lysine.UniRule annotationARBA annotation EC:2.3.2.27
GO - Molecular functioni
- 5S rRNA binding Source: RGD
- disordered domain specific binding Source: RGD
- enzyme binding Source: RGD
- identical protein binding Source: RGD
- ligase activity Source: RGD
- NEDD8 ligase activity Source: RGD
- p53 binding Source: RGD
- peroxisome proliferator activated receptor binding Source: RGD
- protein domain specific binding Source: RGD
- protein N-terminus binding Source: RGD
- receptor serine/threonine kinase binding Source: RGD
- ribonucleoprotein complex binding Source: RGD
- scaffold protein binding Source: RGD
- SUMO transferase activity Source: RGD
- ubiquitin binding Source: RGD
- ubiquitin protein ligase activity Source: UniProtKB
- ubiquitin protein ligase binding Source: RGD
- ubiquitin-protein transferase activity Source: RGD
- zinc ion binding Source: RGD
GO - Biological processi
- amyloid fibril formation Source: RGD
- atrial septum development Source: RGD
- atrioventricular valve morphogenesis Source: RGD
- blood vessel development Source: RGD
- blood vessel remodeling Source: RGD
- cardiac septum morphogenesis Source: RGD
- cellular response to actinomycin D Source: RGD
- cellular response to alkaloid Source: RGD
- cellular response to antibiotic Source: RGD
- cellular response to estrogen stimulus Source: RGD
- cellular response to gamma radiation Source: RGD
- cellular response to growth factor stimulus Source: RGD
- cellular response to hydrogen peroxide Source: RGD
- cellular response to hypoxia Source: RGD
- cellular response to organic cyclic compound Source: RGD
- cellular response to organic substance Source: RGD
- cellular response to peptide hormone stimulus Source: RGD
- cellular response to UV-C Source: RGD
- cellular response to vitamin B1 Source: RGD
- DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest Source: RGD
- endocardial cushion morphogenesis Source: RGD
- establishment of protein localization Source: RGD
- heart development Source: RGD
- heart valve development Source: RGD
- negative regulation of apoptotic process Source: RGD
- negative regulation of cell cycle arrest Source: RGD
- negative regulation of cysteine-type endopeptidase activity involved in apoptotic process Source: RGD
- negative regulation of DNA damage response, signal transduction by p53 class mediator Source: RGD
- negative regulation of gene expression Source: RGD
- negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator Source: RGD
- negative regulation of neuron projection development Source: RGD
- negative regulation of protein processing Source: RGD
- negative regulation of signal transduction by p53 class mediator Source: RGD
- negative regulation of transcription, DNA-templated Source: RGD
- negative regulation of transcription by RNA polymerase II Source: RGD
- peptidyl-lysine modification Source: RGD
- positive regulation of cell cycle Source: RGD
- positive regulation of gene expression Source: RGD
- positive regulation of mitotic cell cycle Source: RGD
- positive regulation of muscle cell differentiation Source: RGD
- positive regulation of proteasomal ubiquitin-dependent protein catabolic process Source: RGD
- positive regulation of protein export from nucleus Source: RGD
- positive regulation of transcription by RNA polymerase II Source: GOC
- positive regulation of vascular associated smooth muscle cell migration Source: RGD
- positive regulation of vascular associated smooth muscle cell proliferation Source: RGD
- protein autoubiquitination Source: RGD
- protein-containing complex assembly Source: RGD
- protein destabilization Source: RGD
- protein localization to nucleus Source: RGD
- protein ubiquitination Source: UniProtKB
- proteolysis involved in cellular protein catabolic process Source: RGD
- regulation of gene expression Source: RGD
- regulation of heart rate Source: RGD
- regulation of protein catabolic process Source: RGD
- regulation of transcription by RNA polymerase II Source: GO_Central
- response to antibiotic Source: RGD
- response to cocaine Source: RGD
- response to drug Source: RGD
- response to ether Source: RGD
- response to formaldehyde Source: RGD
- response to iron ion Source: RGD
- response to magnesium ion Source: RGD
- response to morphine Source: RGD
- response to steroid hormone Source: RGD
- response to toxic substance Source: RGD
- response to water-immersion restraint stress Source: RGD
- traversing start control point of mitotic cell cycle Source: RGD
- ubiquitin-dependent protein catabolic process Source: RGD
- ventricular septum development Source: RGD
Keywordsi
Molecular function | TransferaseUniRule annotationARBA annotation |
Biological process | Ubl conjugation pathwayUniRule annotationARBA annotation |
Ligand | Metal-binding, Zinc |
Names & Taxonomyi
Protein namesi | |
Gene namesi | ORF Names:rCG_48669Imported |
Organismi | Rattus norvegicus (Rat)Imported |
Taxonomic identifieri | 10116 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus |
Proteomesi |
|
Organism-specific databases
RGDi | 1305332, Mdm2 |
Subcellular locationi
Nucleus
- nucleolus UniRule annotationARBA annotation
- nucleoplasm UniRule annotation
Other locations
- Cytoplasm UniRule annotationARBA annotation
Cytosol
- cytosol Source: RGD
Nucleus
- nucleolus Source: RGD
- nucleoplasm Source: RGD
- nucleus Source: RGD
Plasma Membrane
- plasma membrane Source: RGD
Other locations
- cytoplasm Source: RGD
- protein-containing complex Source: RGD
- synapse Source: RGD
Keywords - Cellular componenti
CytoplasmUniRule annotationARBA annotation, NucleusUniRule annotationARBA annotationExpressioni
Gene expression databases
Bgeei | ENSRNOG00000006304, Expressed in testis and 21 other tissues |
ExpressionAtlasi | D3ZVH5, baseline and differential |
Interactioni
GO - Molecular functioni
- disordered domain specific binding Source: RGD
- enzyme binding Source: RGD
- identical protein binding Source: RGD
- p53 binding Source: RGD
- peroxisome proliferator activated receptor binding Source: RGD
- protein domain specific binding Source: RGD
- protein N-terminus binding Source: RGD
- receptor serine/threonine kinase binding Source: RGD
- scaffold protein binding Source: RGD
- ubiquitin binding Source: RGD
- ubiquitin protein ligase binding Source: RGD
Protein-protein interaction databases
STRINGi | 10116.ENSRNOP00000063449 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 267 – 296 | RanBP2-typeInterPro annotationAdd BLAST | 30 | |
Domaini | 405 – 446 | RING-typeInterPro annotationAdd BLAST | 42 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 89 – 156 | DisorderedSequence analysisAdd BLAST | 68 | |
Regioni | 179 – 203 | DisorderedSequence analysisAdd BLAST | 25 | |
Regioni | 311 – 395 | DisorderedSequence analysisAdd BLAST | 85 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 114 – 133 | PolarSequence analysisAdd BLAST | 20 | |
Compositional biasi | 134 – 156 | PolyampholyteSequence analysisAdd BLAST | 23 | |
Compositional biasi | 187 – 203 | PolyampholyteSequence analysisAdd BLAST | 17 | |
Compositional biasi | 311 – 347 | PolyampholyteSequence analysisAdd BLAST | 37 | |
Compositional biasi | 352 – 377 | PolarSequence analysisAdd BLAST | 26 | |
Compositional biasi | 378 – 392 | PolyampholyteSequence analysisAdd BLAST | 15 |
Sequence similaritiesi
Keywords - Domaini
Zinc-fingerPROSITE-ProRule annotationARBA annotationPhylogenomic databases
eggNOGi | ENOG502QQNV, Eukaryota |
GeneTreei | ENSGT00530000063539 |
OrthoDBi | 1329283at2759 |
Family and domain databases
CDDi | cd16783, mRING-HC-C2H2C4_MDM2, 1 hit |
Gene3Di | 1.10.245.10, 1 hit 3.30.40.10, 1 hit |
InterProi | View protein in InterPro IPR028340, Mdm2 IPR015459, MDM2_E3_ligase IPR044080, MDM2_mRING-HC-C2H2C4 IPR016495, p53_neg-reg_MDM_2/4 IPR036885, SWIB_MDM2_dom_sf IPR003121, SWIB_MDM2_domain IPR001876, Znf_RanBP2 IPR036443, Znf_RanBP2_sf IPR001841, Znf_RING IPR013083, Znf_RING/FYVE/PHD |
PANTHERi | PTHR13844:SF15, PTHR13844:SF15, 1 hit |
Pfami | View protein in Pfam PF02201, SWIB, 1 hit PF00641, zf-RanBP, 1 hit |
PIRSFi | PIRSF500700, MDM2, 2 hits PIRSF006748, p53_MDM_2/4, 2 hits |
SUPFAMi | SSF47592, SSF47592, 2 hits SSF90209, SSF90209, 1 hit |
PROSITEi | View protein in PROSITE PS01358, ZF_RANBP2_1, 1 hit PS50199, ZF_RANBP2_2, 1 hit PS50089, ZF_RING_2, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
D3ZVH5-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MCNTNMSVST EGAAGTSQIP ASEQETLIIF YIGQYIMTKR LYDEKQQHIV
60 70 80 90 100
YCSNDLLGDV FGVPSFSVKE HRKIYAMIYR NLVVVSQQDS GTSPSESRCQ
110 120 130 140 150
PEGGSDLKDP VQASQEEKPS SSDVVSRPST SSRRRAISET EENTDELPGE
160 170 180 190 200
RQRKRHRALS FDESLGLCVL REICCERSSS SEATDTPSHQ DLDDGVSDHS
210 220 230 240 250
ADCLDQDSVS DQFSVEFEVE SLDSEDYSLS DEGHELSDED DEVYRVTVYQ
260 270 280 290 300
AGESDADSFE GDPEISLADY WKCTSCNEMN PPLPSHCNRC WTLRENWLPD
310 320 330 340 350
DKGKDKVEIS EKAKLESSDQ AEEGLDVPDG KKVTEDDAKE SSAEDSEEKV
360 370 380 390 400
AQMLLSQESD DYSQPSTSSS IVYSSQESGK ELKEDTQDKE ESMESSFSLN
410 420 430 440 450
AIEPCVICQG RPKNGCIVHG KTGHLMSCFT CAKKLKKRNK PCPVCRQPIQ
MIVLTYFN
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketA0A0G2JVC1 | A0A0G2JVC1_RAT | E3 ubiquitin-protein ligase Mdm2 | Mdm2 | 483 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AABR07057209 Genomic DNA No translation available. CH473960 Genomic DNA Translation: EDM16616.1 CH473960 Genomic DNA Translation: EDM16617.1 |
RefSeqi | NP_001101569.1, NM_001108099.1 |
Genome annotation databases
Ensembli | ENSRNOT00000066767; ENSRNOP00000063449; ENSRNOG00000006304 |
GeneIDi | 314856 |
KEGGi | rno:314856 |
UCSCi | RGD:1305332, rat |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AABR07057209 Genomic DNA No translation available. CH473960 Genomic DNA Translation: EDM16616.1 CH473960 Genomic DNA Translation: EDM16617.1 |
RefSeqi | NP_001101569.1, NM_001108099.1 |
3D structure databases
SMRi | D3ZVH5 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 10116.ENSRNOP00000063449 |
Proteomic databases
PRIDEi | D3ZVH5 |
Genome annotation databases
Ensembli | ENSRNOT00000066767; ENSRNOP00000063449; ENSRNOG00000006304 |
GeneIDi | 314856 |
KEGGi | rno:314856 |
UCSCi | RGD:1305332, rat |
Organism-specific databases
CTDi | 4193 |
RGDi | 1305332, Mdm2 |
Phylogenomic databases
eggNOGi | ENOG502QQNV, Eukaryota |
GeneTreei | ENSGT00530000063539 |
OrthoDBi | 1329283at2759 |
Gene expression databases
Bgeei | ENSRNOG00000006304, Expressed in testis and 21 other tissues |
ExpressionAtlasi | D3ZVH5, baseline and differential |
Family and domain databases
CDDi | cd16783, mRING-HC-C2H2C4_MDM2, 1 hit |
Gene3Di | 1.10.245.10, 1 hit 3.30.40.10, 1 hit |
InterProi | View protein in InterPro IPR028340, Mdm2 IPR015459, MDM2_E3_ligase IPR044080, MDM2_mRING-HC-C2H2C4 IPR016495, p53_neg-reg_MDM_2/4 IPR036885, SWIB_MDM2_dom_sf IPR003121, SWIB_MDM2_domain IPR001876, Znf_RanBP2 IPR036443, Znf_RanBP2_sf IPR001841, Znf_RING IPR013083, Znf_RING/FYVE/PHD |
PANTHERi | PTHR13844:SF15, PTHR13844:SF15, 1 hit |
Pfami | View protein in Pfam PF02201, SWIB, 1 hit PF00641, zf-RanBP, 1 hit |
PIRSFi | PIRSF500700, MDM2, 2 hits PIRSF006748, p53_MDM_2/4, 2 hits |
SUPFAMi | SSF47592, SSF47592, 2 hits SSF90209, SSF90209, 1 hit |
PROSITEi | View protein in PROSITE PS01358, ZF_RANBP2_1, 1 hit PS50199, ZF_RANBP2_2, 1 hit PS50089, ZF_RING_2, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | D3ZVH5_RAT | |
Accessioni | D3ZVH5Primary (citable) accession number: D3ZVH5 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | April 20, 2010 |
Last sequence update: | April 20, 2010 | |
Last modified: | February 10, 2021 | |
This is version 96 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |