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Protein

Histone deacetylase

Gene

LOC108348065

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Catalytic activityi

Hydrolysis of an N6-acetyl-lysine residue of a histone to yield a deacetylated histone.SAAS annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri1071 – 1132UBP-typePROSITE-ProRule annotationAdd BLAST62

GO - Molecular functioni

Keywordsi

Molecular functionChromatin regulatorSAAS annotation, HydrolaseSAAS annotation
Biological processTranscription, Transcription regulationSAAS annotation

Enzyme and pathway databases

ReactomeiR-RNO-3371511 HSF1 activation
R-RNO-5617833 Cilium Assembly

Names & Taxonomyi

Protein namesi
Recommended name:
Histone deacetylaseSAAS annotation (EC:3.5.1.98SAAS annotation)
Gene namesi
Name:LOC108348065Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome X

Organism-specific databases

RGDi11442569 LOC108348065

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusSAAS annotation

PTM / Processingi

Proteomic databases

PaxDbiD3ZVD8
PeptideAtlasiD3ZVD8
PRIDEiD3ZVD8

Expressioni

Gene expression databases

BgeeiENSRNOG00000047281 Expressed in 4 organ(s), highest expression level in adult mammalian kidney

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000063689

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1071 – 1132UBP-typeInterPro annotationAdd BLAST62

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri1071 – 1132UBP-typePROSITE-ProRule annotationAdd BLAST62

Phylogenomic databases

eggNOGiKOG1343 Eukaryota
COG0123 LUCA
GeneTreeiENSGT00530000062809
OMAiDPLGHCD
OrthoDBiEOG091G0210

Family and domain databases

Gene3Di3.30.40.10, 1 hit
3.40.800.20, 2 hits
InterProiView protein in InterPro
IPR000286 His_deacetylse
IPR023801 His_deacetylse_dom
IPR037138 His_deacetylse_dom_sf
IPR023696 Ureohydrolase_dom_sf
IPR013083 Znf_RING/FYVE/PHD
IPR001607 Znf_UBP
PANTHERiPTHR10625 PTHR10625, 4 hits
PfamiView protein in Pfam
PF00850 Hist_deacetyl, 2 hits
PF02148 zf-UBP, 1 hit
PRINTSiPR01270 HDASUPER
SMARTiView protein in SMART
SM00290 ZnF_UBP, 1 hit
SUPFAMiSSF52768 SSF52768, 2 hits
PROSITEiView protein in PROSITE
PS50271 ZF_UBP, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

D3ZVD8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTSTGQDSST RQRKSRHNPQ SPLQDSSATL KRGGKKGAVP HSSPNLAEVK
60 70 80 90 100
KKGKMKKLSQ PAEEDLIVGL QGLDLNSETR VPVGTGLVFD EQLNDFHCLW
110 120 130 140 150
DDSFPENPER LHAIKEQLIL EGLLGRCVSF QARFAEKEEL MLVHSLEYID
160 170 180 190 200
LMETTQYMNE GELRVLAGTY DSVYLHPNSY SCACLATGSV LRLVDAVMGA
210 220 230 240 250
EIRNGMAVIR PPGHHAQRSL MDGYCMFNHL AVAARYAQKK HRIQRILIVD
260 270 280 290 300
WDVHHGQGTQ FIFDQDPSVL YFSIHRYEHG RFWPHLKASN WSTTGFGQGQ
310 320 330 340 350
GYTINVPWNQ VGMRDADYIA AFLHILLPVA FEFQPQLVLV AAGFDALHGD
360 370 380 390 400
PKVRQGEMSA TPAGFAHLTH FLMGLAGGKL ILSLEGGYNL HALAKGVSGS
410 420 430 440 450
LHTLLGDPCP MLESPVAPCA SAQTSISCTL EALEPFWEVL ERSVEPQDED
460 470 480 490 500
EVEGDMLEDE EEEGHWEATA LPMDTWPLLQ NRTGLVYDER MMSHCNLWDN
510 520 530 540 550
HHPETPQRIL RIMCHLEEVG LAARCLILPA RPALDSELLT CHSAEYVERL
560 570 580 590 600
RATEKMKTRD LHREGANFES IYICPSTFAC AQLATGAACR LVEAVLSGEV
610 620 630 640 650
LNGIAIVRPP GHHAEPDAAC GFCFFNSVAV AARHAQVIAG RALRILIVDW
660 670 680 690 700
DVHHGNGTQH IFEEDPSVLY VSLHRYDRGT FFPMGDEGAS SQVGRAAGTG
710 720 730 740 750
FTVNVPWNGP RMGDADYLAT WHRLVLPIAY EFNPELVLIS AGFDAAQGDP
760 770 780 790 800
LGGCQVTPEG YAHLTHLLMG LAGGRIILIL EGGYNLTSIS ESMAACTHSL
810 820 830 840 850
LGDPPPQLTS LRPPQSGALA SISEVIQVHR KYWRSLRLMK MEDKEERSSS
860 870 880 890 900
RLVIKKLPQS ASPVSAKGMT TPKGKVLEAG MRKPTAALPT KESTLGQAKA
910 920 930 940 950
KTAKALLAQG QSSEQAAKGT TLDLATSKDT VGGATTDQCA SVAATENSAN
960 970 980 990 1000
QTTSGEEASG ETESFGTSPS SNASKQTTGA SPLHGAAAQQ SPELGLSSTL
1010 1020 1030 1040 1050
ELSSEAQEVQ ESEEGLLGEA AGGQDMNSLM LTQGFGDFNT QDVFYAVTPL
1060 1070 1080 1090 1100
SWCPHLMAVC PIPAAGLDVS QPCKTCGSVQ ENWVCLTCYQ VYCSRYVNAH
1110 1120 1130 1140 1150
MVCHHEASEH PLVLSCVDLS TWCYLCQAYV HHEDLQDVKN AAHQNKFGEG

MPHLQ
Length:1,155
Mass (Da):125,878
Last modified:April 3, 2013 - v2
Checksum:iB0DEA1101E78B88F
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0G2QC41A0A0G2QC41_RAT
Histone deacetylase
Hdac6 LOC103689963, LOC108348065
1,152Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07073519 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSRNOT00000064924; ENSRNOP00000063689; ENSRNOG00000047281

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07073519 Genomic DNA No translation available.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000063689

Proteomic databases

PaxDbiD3ZVD8
PeptideAtlasiD3ZVD8
PRIDEiD3ZVD8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000064924; ENSRNOP00000063689; ENSRNOG00000047281

Organism-specific databases

RGDi11442569 LOC108348065

Phylogenomic databases

eggNOGiKOG1343 Eukaryota
COG0123 LUCA
GeneTreeiENSGT00530000062809
OMAiDPLGHCD
OrthoDBiEOG091G0210

Enzyme and pathway databases

ReactomeiR-RNO-3371511 HSF1 activation
R-RNO-5617833 Cilium Assembly

Gene expression databases

BgeeiENSRNOG00000047281 Expressed in 4 organ(s), highest expression level in adult mammalian kidney

Family and domain databases

Gene3Di3.30.40.10, 1 hit
3.40.800.20, 2 hits
InterProiView protein in InterPro
IPR000286 His_deacetylse
IPR023801 His_deacetylse_dom
IPR037138 His_deacetylse_dom_sf
IPR023696 Ureohydrolase_dom_sf
IPR013083 Znf_RING/FYVE/PHD
IPR001607 Znf_UBP
PANTHERiPTHR10625 PTHR10625, 4 hits
PfamiView protein in Pfam
PF00850 Hist_deacetyl, 2 hits
PF02148 zf-UBP, 1 hit
PRINTSiPR01270 HDASUPER
SMARTiView protein in SMART
SM00290 ZnF_UBP, 1 hit
SUPFAMiSSF52768 SSF52768, 2 hits
PROSITEiView protein in PROSITE
PS50271 ZF_UBP, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZVD8_RAT
AccessioniPrimary (citable) accession number: D3ZVD8
Secondary accession number(s): F1LSE3
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: November 7, 2018
This is version 72 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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