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Protein
Submitted name:

Mesoderm posterior bHLH transcription factor 1

Gene

Mesp1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Mesoderm posterior bHLH transcription factor 1Imported
Submitted name:
RCG24568Imported
Gene namesi
Name:Mesp1Imported
ORF Names:rCG_24568Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi1311751 Mesp1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD3ZUG3

Expressioni

Gene expression databases

BgeeiENSRNOG00000014951 Expressed in 2 organ(s), highest expression level in testis

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000020117

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini76 – 130BHLHInterPro annotationAdd BLAST55

Phylogenomic databases

eggNOGiKOG4029 Eukaryota
ENOG411227D LUCA
GeneTreeiENSGT00530000063712
KOiK09076
OMAiLETWMPL
OrthoDBiEOG091G0LDC
TreeFamiTF325707

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit

Sequencei

Sequence statusi: Complete.

D3ZUG3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAQPLCAPLS KSWIPSPARP QPSMPSDGDS FCSPAWSSDS WDGAQASSPA
60 70 80 90 100
LPCARPARRA GTPGRRGTHG SRLGSGQRQS ASEREKLRMR TLARALHELR
110 120 130 140 150
RFLPPSVAPI GQNLTKIETL RLAIRYIGHL SAVLGLSEDS LRQQRHAVSP
160 170 180 190 200
RGCPLCPDSG LAQAQSLGPH LSPVACSGVS WGSSPAYPRP RVAAESWDPS
210 220 230 240
FLYTETASLE RQEMEPSPSS PLFSSDMLAL LETWTPQEWP PA
Length:242
Mass (Da):26,125
Last modified:April 20, 2010 - v1
Checksum:i58E9748027CAD59F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC096024 Genomic DNA No translation available.
CH473980 Genomic DNA Translation: EDM08597.1
RefSeqiNP_001101001.1, NM_001107531.1
UniGeneiRn.115951

Genome annotation databases

EnsembliENSRNOT00000020117; ENSRNOP00000020117; ENSRNOG00000014951
GeneIDi308766
KEGGirno:308766
UCSCiRGD:1311751 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC096024 Genomic DNA No translation available.
CH473980 Genomic DNA Translation: EDM08597.1
RefSeqiNP_001101001.1, NM_001107531.1
UniGeneiRn.115951

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000020117

Proteomic databases

PRIDEiD3ZUG3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000020117; ENSRNOP00000020117; ENSRNOG00000014951
GeneIDi308766
KEGGirno:308766
UCSCiRGD:1311751 rat

Organism-specific databases

CTDi55897
RGDi1311751 Mesp1

Phylogenomic databases

eggNOGiKOG4029 Eukaryota
ENOG411227D LUCA
GeneTreeiENSGT00530000063712
KOiK09076
OMAiLETWMPL
OrthoDBiEOG091G0LDC
TreeFamiTF325707

Gene expression databases

BgeeiENSRNOG00000014951 Expressed in 2 organ(s), highest expression level in testis

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
PfamiView protein in Pfam
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZUG3_RAT
AccessioniPrimary (citable) accession number: D3ZUG3
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 66 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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