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Protein
Submitted name:

B-cell CLL/lymphoma 6B

Gene

Bcl6b

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
B-cell CLL/lymphoma 6BImported
Submitted name:
Similar to BAZF (Predicted)Imported
Gene namesi
Name:Bcl6bImported
Synonyms:RGD1563179_predictedImported
ORF Names:rCG_33355Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1563179 Bcl6b

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD3ZTN3

Expressioni

Gene expression databases

BgeeiENSRNOG00000059956 Expressed in 9 organ(s), highest expression level in heart

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000025430

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini38 – 105BTBInterPro annotationAdd BLAST68
Domaini321 – 348C2H2-typeInterPro annotationAdd BLAST28
Domaini349 – 376C2H2-typeInterPro annotationAdd BLAST28
Domaini377 – 404C2H2-typeInterPro annotationAdd BLAST28
Domaini405 – 432C2H2-typeInterPro annotationAdd BLAST28
Domaini433 – 461C2H2-typeInterPro annotationAdd BLAST29

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00930000150977
KOiK22648
OMAiVCGARFN
OrthoDBiEOG091G025U

Family and domain databases

InterProiView protein in InterPro
IPR000210 BTB/POZ_dom
IPR011333 SKP1/BTB/POZ_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00651 BTB, 1 hit
PF00096 zf-C2H2, 2 hits
SMARTiView protein in SMART
SM00225 BTB, 1 hit
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF54695 SSF54695, 1 hit
SSF57667 SSF57667, 3 hits
PROSITEiView protein in PROSITE
PS50097 BTB, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 5 hits
PS50157 ZINC_FINGER_C2H2_2, 5 hits

Sequencei

Sequence statusi: Complete.

D3ZTN3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGSTAAPEGA LGYVREFTRH SSDVLSNLNE LRLRGILTDV TLLVGGQPLR
60 70 80 90 100
AHKAVLIACS GFFYSIFRGR AGVGVDVLSL PGGPEARGFA PLLDFMYTSR
110 120 130 140 150
LRLSPATAPA VLAAATYLQM EHVVQACHRF IQASYEPLGI SLRPMEAEPP
160 170 180 190 200
RPPTVPPPGS PRRSEGHPDP PTESRSCSQG SPSPASPDPK ACNWKKYKFI
210 220 230 240 250
VLNSQSSQAG SLAGESSGQP CPQARLPSGD EACSSSSSSS SEEGATPGLQ
260 270 280 290 300
SRLSLATTTA RFKCGALANN SYLFTPPAQE TSKQAHPPPG SECLSCQNCE
310 320 330 340 350
AVAGCSSGIE PLAPGDEDKP YKCQLCRSAF RYKGNLASHR TVHTGEKPYR
360 370 380 390 400
CSVCGARFNR PANLKTHSRI HSGEKPYKCE TCGSRFVQVA HLRAHVLIHT
410 420 430 440 450
GEKPYPCPTC GTRFRHLQTL KSHVRIHTGE KPYHCDPCGL HFRHKSQLRL
460 470
HLRQKHGAAT NTKVRYHILG GP
Length:472
Mass (Da):50,945
Last modified:April 20, 2010 - v1
Checksum:iE6397297AB6876DF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07029870 Genomic DNA No translation available.
AABR07072136 Genomic DNA No translation available.
CH473948 Genomic DNA Translation: EDM04985.1
RefSeqiNP_001101749.1, NM_001108279.1
XP_008766063.1, XM_008767841.1
XP_008766064.1, XM_008767842.1
XP_008766065.1, XM_008767843.1
UniGeneiRn.137148

Genome annotation databases

EnsembliENSRNOT00000090338; ENSRNOP00000071137; ENSRNOG00000059956
GeneIDi360551
KEGGirno:360551
UCSCiRGD:1563179 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07029870 Genomic DNA No translation available.
AABR07072136 Genomic DNA No translation available.
CH473948 Genomic DNA Translation: EDM04985.1
RefSeqiNP_001101749.1, NM_001108279.1
XP_008766063.1, XM_008767841.1
XP_008766064.1, XM_008767842.1
XP_008766065.1, XM_008767843.1
UniGeneiRn.137148

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000025430

Proteomic databases

PRIDEiD3ZTN3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000090338; ENSRNOP00000071137; ENSRNOG00000059956
GeneIDi360551
KEGGirno:360551
UCSCiRGD:1563179 rat

Organism-specific databases

CTDi255877
RGDi1563179 Bcl6b

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00930000150977
KOiK22648
OMAiVCGARFN
OrthoDBiEOG091G025U

Gene expression databases

BgeeiENSRNOG00000059956 Expressed in 9 organ(s), highest expression level in heart

Family and domain databases

InterProiView protein in InterPro
IPR000210 BTB/POZ_dom
IPR011333 SKP1/BTB/POZ_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00651 BTB, 1 hit
PF00096 zf-C2H2, 2 hits
SMARTiView protein in SMART
SM00225 BTB, 1 hit
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF54695 SSF54695, 1 hit
SSF57667 SSF57667, 3 hits
PROSITEiView protein in PROSITE
PS50097 BTB, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 5 hits
PS50157 ZINC_FINGER_C2H2_2, 5 hits
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZTN3_RAT
AccessioniPrimary (citable) accession number: D3ZTN3
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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