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Protein
Submitted name:

RCG32901

Gene

Sp6

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

  • DNA-binding transcription factor activity, RNA polymerase II-specific Source: GO_Central
  • nucleic acid binding Source: InterPro

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
RCG32901Imported
Submitted name:
Sp6 transcription factorImported
Gene namesi
Name:Sp6Imported
ORF Names:rCG_32901Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1306768 Sp6

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PRIDEiD3ZT88

Expressioni

Gene expression databases

BgeeiENSRNOG00000023551 Expressed in 7 organ(s), highest expression level in adult mammalian kidney

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000030832

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini254 – 283C2H2-typeInterPro annotationAdd BLAST30
Domaini284 – 313C2H2-typeInterPro annotationAdd BLAST30
Domaini314 – 341C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00760000118984
KOiK09196
OMAiHPGTEDG
OrthoDBiEOG091G0HX6
TreeFamiTF315506

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 3 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 3 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 3 hits

Sequencei

Sequence statusi: Complete.

D3ZT88-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLTAVCGSLG SQHTDAPHSS PPRLDLQPLQ TYQGHTSPEA GDYPSPLQPG
60 70 80 90 100
ELQSLPLGPE VDFSQGYELP GASSRVTCED LESDSPLAPG PFSKLLQPDM
110 120 130 140 150
SHHYESWFRP THPGTEDGSW WDLHPGTSWM DLPHTQGALT SPGHPGALQP
160 170 180 190 200
ALGGYVGDHQ LCAPPPHPHP HHLLPAAGGQ HLLGPPDGAK VLEAAAPESQ
210 220 230 240 250
GLDSSLDAAA RPKGSRRSVP RSSGQTVCRC PNCLEAERLG APCGPDGGKK
260 270 280 290 300
KHLHNCHIPG CGKAYAKTSH LKAHLRWHSG DRPFVCNWLF CGKRFTRSDE
310 320 330 340 350
LQRHLQTHTG TKKFPCAVCS RVFMRSDHLA KHMKTHEGAK EEAAAAAQGE
360 370
GKAGGVVESP GGKGKREAEG SSASSN
Length:376
Mass (Da):40,003
Last modified:April 20, 2010 - v1
Checksum:iB1A9CC2AE9DF8607
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07030423 Genomic DNA No translation available.
CH473948 Genomic DNA Translation: EDM05837.1
RefSeqiNP_001102303.1, NM_001108833.1
XP_017452916.1, XM_017597427.1
UniGeneiRn.218646

Genome annotation databases

EnsembliENSRNOT00000038572; ENSRNOP00000030832; ENSRNOG00000023551
GeneIDi363672
KEGGirno:363672
UCSCiRGD:1306768 rat

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07030423 Genomic DNA No translation available.
CH473948 Genomic DNA Translation: EDM05837.1
RefSeqiNP_001102303.1, NM_001108833.1
XP_017452916.1, XM_017597427.1
UniGeneiRn.218646

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000030832

Proteomic databases

PRIDEiD3ZT88

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000038572; ENSRNOP00000030832; ENSRNOG00000023551
GeneIDi363672
KEGGirno:363672
UCSCiRGD:1306768 rat

Organism-specific databases

CTDi80320
RGDi1306768 Sp6

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00760000118984
KOiK09196
OMAiHPGTEDG
OrthoDBiEOG091G0HX6
TreeFamiTF315506

Gene expression databases

BgeeiENSRNOG00000023551 Expressed in 7 organ(s), highest expression level in adult mammalian kidney

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 3 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 3 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 3 hits
PS50157 ZINC_FINGER_C2H2_2, 3 hits
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZT88_RAT
AccessioniPrimary (citable) accession number: D3ZT88
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: November 7, 2018
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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