UniProtKB - D3ZR17 (D3ZR17_RAT)
Protein
U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Gene
Snrnp27
Organism
Rattus norvegicus (Rat)
Status
Functioni
May play a role in mRNA splicing.ARBA annotation
GO - Molecular functioni
- identical protein binding Source: RGD
GO - Biological processi
- mRNA processing Source: UniProtKB-KW
- regulation of transcription, DNA-templated Source: RGD
- RNA splicing Source: UniProtKB-KW
Keywordsi
Biological process | mRNA processing, mRNA splicingARBA annotation |
Names & Taxonomyi
Protein namesi | Recommended name: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa proteinARBA annotationAlternative name(s): U4/U6.U5 tri-snRNP-associated protein 3ARBA annotation |
Gene namesi | ORF Names:rCG_56216Imported |
Organismi | Rattus norvegicus (Rat)Imported |
Taxonomic identifieri | 10116 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Rattus |
Proteomesi |
|
Organism-specific databases
RGDi | 1359265, Gmcl1 1310925, Snrnp27 |
Subcellular locationi
Nucleus
- Nucleus ARBA annotation
Nucleus
- nuclear envelope Source: RGD
- nuclear matrix Source: RGD
- nucleus Source: GO_Central
Keywords - Cellular componenti
NucleusARBA annotationExpressioni
Gene expression databases
Bgeei | ENSRNOG00000017838, Expressed in brain and 22 other tissues |
Interactioni
Subunit structurei
Part of a tri-snRNP complex.
ARBA annotationGO - Molecular functioni
- identical protein binding Source: RGD
Protein-protein interaction databases
STRINGi | 10116.ENSRNOP00000060276 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 98 – 154 | SNRNP27InterPro annotationAdd BLAST | 57 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 96 | DisorderedSequence analysisAdd BLAST | 96 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 15 – 31 | PolyampholyteSequence analysisAdd BLAST | 17 | |
Compositional biasi | 32 – 61 | BasicSequence analysisAdd BLAST | 30 | |
Compositional biasi | 62 – 96 | PolyampholyteSequence analysisAdd BLAST | 35 |
Sequence similaritiesi
Belongs to the SNUT3 family.ARBA annotation
Phylogenomic databases
eggNOGi | KOG3263, Eukaryota |
GeneTreei | ENSGT00940000156185 |
HOGENOMi | CLU_075596_2_1_1 |
OMAi | DSSTMWD |
OrthoDBi | 1627375at2759 |
TreeFami | TF314458 |
Family and domain databases
InterProi | View protein in InterPro IPR013957, SNRNP27 |
Pfami | View protein in Pfam PF08648, SNRNP27, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All
D3ZR17-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MGRSRSRSPR RERRRSRSTS RDRERRRRER SRSRERDRRR SRSRSPHRRR
60 70 80 90 100
SRSPRRHRST SPSPSRLKER RDEEKKETKE VKNKERQITE EDLEGKTEEE
110 120 130 140 150
IEMMKLMGFA SFDSTKGKKV DGSVNAYAIN VSQKRKYRQY MNRKGGFNRP
LDFIA
Computationally mapped potential isoform sequencesi
There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketQ5I287 | Q5I287_RAT | Germ cell-less 1, spermatogenesis-a... | Gmcl1 Gcl, rCG_56524 | 524 | Annotation score: | ||
A0A0G2K533 | A0A0G2K533_RAT | Germ cell-less 1, spermatogenesis-a... | Gmcl1 | 537 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC139642 Genomic DNA No translation available. CH473957 Genomic DNA Translation: EDL91257.1 |
RefSeqi | NP_001102106.1, NM_001108636.1 |
Genome annotation databases
Ensembli | ENSRNOT00000068093; ENSRNOP00000060276; ENSRNOG00000017838 |
GeneIDi | 362392 |
KEGGi | rno:362392 |
UCSCi | RGD:1310925, rat |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AC139642 Genomic DNA No translation available. CH473957 Genomic DNA Translation: EDL91257.1 |
RefSeqi | NP_001102106.1, NM_001108636.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 10116.ENSRNOP00000060276 |
Genome annotation databases
Ensembli | ENSRNOT00000068093; ENSRNOP00000060276; ENSRNOG00000017838 |
GeneIDi | 362392 |
KEGGi | rno:362392 |
UCSCi | RGD:1310925, rat |
Organism-specific databases
CTDi | 11017 |
RGDi | 1359265, Gmcl1 1310925, Snrnp27 |
Phylogenomic databases
eggNOGi | KOG3263, Eukaryota |
GeneTreei | ENSGT00940000156185 |
HOGENOMi | CLU_075596_2_1_1 |
OMAi | DSSTMWD |
OrthoDBi | 1627375at2759 |
TreeFami | TF314458 |
Gene expression databases
Bgeei | ENSRNOG00000017838, Expressed in brain and 22 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR013957, SNRNP27 |
Pfami | View protein in Pfam PF08648, SNRNP27, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | D3ZR17_RAT | |
Accessioni | D3ZR17Primary (citable) accession number: D3ZR17 Secondary accession number(s): D3ZBG5 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | April 20, 2010 |
Last sequence update: | April 3, 2013 | |
Last modified: | April 7, 2021 | |
This is version 83 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |