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Protein
Submitted name:

CCCTC-binding factor-like

Gene

Ctcfl

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
CCCTC-binding factor-likeImported
Gene namesi
Name:CtcflImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 3

Organism-specific databases

RGDi2321501 Ctcfl

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiD3ZQ48
PRIDEiD3ZQ48

Expressioni

Gene expression databases

BgeeiENSRNOG00000028661 Expressed in 3 organ(s), highest expression level in testis

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000034635

Structurei

3D structure databases

ProteinModelPortaliD3ZQ48
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini255 – 282C2H2-typeInterPro annotationAdd BLAST28
Domaini283 – 310C2H2-typeInterPro annotationAdd BLAST28
Domaini311 – 339C2H2-typeInterPro annotationAdd BLAST29
Domaini340 – 367C2H2-typeInterPro annotationAdd BLAST28
Domaini368 – 395C2H2-typeInterPro annotationAdd BLAST28
Domaini396 – 424C2H2-typeInterPro annotationAdd BLAST29
Domaini426 – 456C2H2-typeInterPro annotationAdd BLAST31
Domaini456 – 483C2H2-typeInterPro annotationAdd BLAST28
Domaini484 – 511C2H2-typeInterPro annotationAdd BLAST28
Domaini512 – 535C2H2-typeInterPro annotationAdd BLAST24
Domaini544 – 575C2H2-typeInterPro annotationAdd BLAST32

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00890000139371
InParanoidiD3ZQ48
OMAiLRNLHTY
OrthoDBiEOG091G06B4
PhylomeDBiD3ZQ48
TreeFamiTF106430

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 5 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 11 hits
SUPFAMiSSF57667 SSF57667, 6 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 7 hits
PS50157 ZINC_FINGER_C2H2_2, 11 hits

Sequencei

Sequence statusi: Complete.

D3ZQ48-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAAAEVPVAS GHFTQIKEQK LKPGDLEEEK EEGGVQRGEA QEGAVEEAEA
60 70 80 90 100
EPQELPSRAP VESDRRILTL QTLHLTSQDV HLQGLGWLSV PHSEELSMTV
110 120 130 140 150
PQAESILQLP SVLWLDPEPP LSLQHCVTVS IPEELYPPEM LELRHFHLLR
160 170 180 190 200
ENVPEDDEEN QESTSNLEES TAPKKPEEDE KDQLLPQGGT DKKEERFLFV
210 220 230 240 250
EMKPREGKDE IVLTISHLSL EEQQDPPAAK HTSAPGAKAA KPKPQRQTKG
260 270 280 290 300
RPRTFQCDTC PFTSSKLSTF NRHIKIHSDE RPHLCHLCLK SFRTVTLLRN
310 320 330 340 350
HVNTHTGTRP YKCGDCDMAF VTSGELVRHR RYKHTHEKPF KCSLCKYASV
360 370 380 390 400
EASKLKRHIR SHTGERPFQC SQCAYASKDT YKLKRHMRTH SGEKPYECPT
410 420 430 440 450
CHARFTQSGT MKIHIAQKHG ENVPKHECPH CATIIARKSD LRVHLRNLHG
460 470 480 490 500
HSPEEIKCRY CPAAFHERYA LLQHQRTHKN EKKFKCKQCD YACKQERCLT
510 520 530 540 550
AHMRTHTGER PFSCLTCNKH FRQKQLLTVH LRKYHDPSFV PSVHLCLKCG
560 570 580 590 600
KGFSRWSNLQ RHRKKCDPEH EKSAPSRNGR PVTRAQASEE GAEHDKGEPR
610 620 630
PPEEQALGHQ GESAAGSPSP DQGLTCEMIF NMMDK
Length:635
Mass (Da):72,419
Last modified:July 22, 2015 - v3
Checksum:i65F28C00B1E39F89
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07054833 Genomic DNA No translation available.

Genome annotation databases

EnsembliENSRNOT00000034131; ENSRNOP00000034635; ENSRNOG00000028661

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07054833 Genomic DNA No translation available.

3D structure databases

ProteinModelPortaliD3ZQ48
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000034635

Proteomic databases

PaxDbiD3ZQ48
PRIDEiD3ZQ48

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000034131; ENSRNOP00000034635; ENSRNOG00000028661

Organism-specific databases

RGDi2321501 Ctcfl

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00890000139371
InParanoidiD3ZQ48
OMAiLRNLHTY
OrthoDBiEOG091G06B4
PhylomeDBiD3ZQ48
TreeFamiTF106430

Gene expression databases

BgeeiENSRNOG00000028661 Expressed in 3 organ(s), highest expression level in testis

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 5 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 11 hits
SUPFAMiSSF57667 SSF57667, 6 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 7 hits
PS50157 ZINC_FINGER_C2H2_2, 11 hits
ProtoNetiSearch...

Entry informationi

Entry nameiD3ZQ48_RAT
AccessioniPrimary (citable) accession number: D3ZQ48
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: July 22, 2015
Last modified: November 7, 2018
This is version 62 of the entry and version 3 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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